Divergence in gene expression within and between two closely related flycatcher species
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Title
Divergence in gene expression within and between two closely related flycatcher species
Authors
Keywords
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Journal
MOLECULAR ECOLOGY
Volume 25, Issue 9, Pages 2015-2028
Publisher
Wiley
Online
2016-02-29
DOI
10.1111/mec.13596
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Note: Only part of the references are listed.- The impact of human copy number variation on gene expression: Figure 1
- (2015) Eric R. Gamazon et al. Briefings in Functional Genomics
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- (2015) Michael Schmid et al. CYTOGENETIC AND GENOME RESEARCH
- Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum ofFicedulaflycatchers
- (2015) Reto Burri et al. GENOME RESEARCH
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- (2015) Mariano Alvarez et al. MOLECULAR ECOLOGY
- Resolving Evolutionary Relationships in Closely Related Species with Whole-Genome Sequencing Data
- (2015) Alexander Nater et al. SYSTEMATIC BIOLOGY
- Towards the identification of the loci of adaptive evolution
- (2015) Carolina Pardo-Diaz et al. Methods in Ecology and Evolution
- ngsTools: methods for population genetics analyses from next-generation sequencing data
- (2014) Matteo Fumagalli et al. BIOINFORMATICS
- In absence of local adaptation, plasticity and spatially varying selection rule: a view from genomic reaction norms in a panmictic species (Anguilla rostrata)
- (2014) Caroline L Côté et al. BMC GENOMICS
- Hybrid Incompatibility Despite Pleiotropic Constraint in a Sequence-Based Bioenergetic Model of Transcription Factor Binding
- (2014) Alexander Y. Tulchinsky et al. GENETICS
- Hybrid Incompatibility Arises in a Sequence-Based Bioenergetic Model of Transcription Factor Binding
- (2014) A. Y. Tulchinsky et al. GENETICS
- RNA-seq Reveals Transcriptomic Shock Involving Transposable Elements Reactivation in Hybrids of Young Lake Whitefish Species
- (2014) Anne-Marie Dion-Côté et al. MOLECULAR BIOLOGY AND EVOLUTION
- Gene expression plasticity evolves in response to colonization of freshwater lakes in threespine stickleback
- (2014) Matthew R. J. Morris et al. MOLECULAR ECOLOGY
- A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution
- (2014) Takeshi Kawakami et al. MOLECULAR ECOLOGY
- Evolution of mosquito preference for humans linked to an odorant receptor
- (2014) Carolyn S. McBride et al. NATURE
- UniProt: a hub for protein information
- (2014) NUCLEIC ACIDS RESEARCH
- Local Adaptation at the Transcriptome Level in Brown Trout: Evidence from Early Life History Temperature Genomic Reaction Norms
- (2014) Kristian Meier et al. PLoS One
- A Single Gene Affects Both Ecological Divergence and Mate Choice in Drosophila
- (2014) H. Chung et al. SCIENCE
- The genomic landscape underlying phenotypic integrity in the face of gene flow in crows
- (2014) J. W. Poelstra et al. SCIENCE
- Gene pleiotropy constrains gene expression changes in fish adapted to different thermal conditions
- (2014) Spiros Papakostas et al. Nature Communications
- Inferring the demographic history of European Ficedula flycatcher populations
- (2013) Niclas Backström et al. BMC EVOLUTIONARY BIOLOGY
- Finding the active genes in deep RNA-seq gene expression studies
- (2013) Traver Hart et al. BMC GENOMICS
- A Pair of Centromeric Proteins Mediates Reproductive Isolation in Drosophila Species
- (2013) Andreas W. Thomae et al. DEVELOPMENTAL CELL
- An Imprinted Gene Underlies Postzygotic Reproductive Isolation in Arabidopsis thaliana
- (2013) David Kradolfer et al. DEVELOPMENTAL CELL
- Transcriptome Sequencing Reveals the Character of Incomplete Dosage Compensation across Multiple Tissues in Flycatchers
- (2013) Severin Uebbing et al. Genome Biology and Evolution
- QST–FST comparisons: evolutionary and ecological insights from genomic heterogeneity
- (2013) Tuomas Leinonen et al. NATURE REVIEWS GENETICS
- FunCoup 3.0: database of genome-wide functional coupling networks
- (2013) Thomas Schmitt et al. NUCLEIC ACIDS RESEARCH
- miRBase: annotating high confidence microRNAs using deep sequencing data
- (2013) Ana Kozomara et al. NUCLEIC ACIDS RESEARCH
- Ensembl 2014
- (2013) Paul Flicek et al. NUCLEIC ACIDS RESEARCH
- Early gene expression divergence between allopatric populations of the house mouse (Mus musculus domesticus)
- (2013) Jarosław Bryk et al. Ecology and Evolution
- Demographic Divergence History of Pied Flycatcher and Collared Flycatcher Inferred from Whole-Genome Re-sequencing Data
- (2013) Krystyna Nadachowska-Brzyska et al. PLoS Genetics
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- Comparative studies of gene expression and the evolution of gene regulation
- (2012) Irene Gallego Romero et al. NATURE REVIEWS GENETICS
- Rfam 11.0: 10 years of RNA families
- (2012) Sarah W. Burge et al. NUCLEIC ACIDS RESEARCH
- SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data
- (2012) Rasmus Nielsen et al. PLoS One
- Th17 differentiation is the default program for DPP2-deficient T-cell differentiation
- (2011) Deanna A. Mele et al. EUROPEAN JOURNAL OF IMMUNOLOGY
- Mapping copy number variation by population-scale genome sequencing
- (2011) Ryan E. Mills et al. NATURE
- The evolution of gene expression levels in mammalian organs
- (2011) David Brawand et al. NATURE
- Genome-wide patterns of divergence during speciation: the lake whitefish case study
- (2011) S. Renaut et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- The role of gene expression in ecological speciation
- (2010) Scott A. Pavey et al. Annals of the New York Academy of Sciences
- Genome-wide analysis of transcriptomic divergence between laboratory colony and field Anopheles gambiae mosquitoes of the M and S molecular forms
- (2010) R. Aguilar et al. INSECT MOLECULAR BIOLOGY
- GUIDANCE: a web server for assessing alignment confidence scores
- (2010) O. Penn et al. NUCLEIC ACIDS RESEARCH
- Permutation P-values Should Never Be Zero: Calculating Exact P-values When Permutations Are Randomly Drawn
- (2010) Belinda Phipson et al. Statistical Applications in Genetics and Molecular Biology
- Gene ontology analysis for RNA-seq: accounting for selection bias
- (2010) Matthew D Young et al. GENOME BIOLOGY
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer
- (2009) Y. F. Chan et al. SCIENCE
- Transcriptomic variation and plasticity in rufous-collared sparrows (Zonotrichia capensis) along an altitudinal gradient
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- (2008) Patricia J Wittkopp et al. NATURE GENETICS
- Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation
- (2008) Luis López-Maury et al. NATURE REVIEWS GENETICS
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