Gut microbiota maturation during early human life induces enterocyte proliferation via microbial metabolites

FXR Regulates Intestinal Cancer Stem Cell Proliferation

(2019) Ting Fu et al.   CELL

The relationship between fecal bile acids and microbiome community structure in pediatric Crohn’s disease

(2019) Jessica Connors et al.   ISME Journal

TFAM is required for maturation of the fetal and adult intestinal epithelium

(2018) Manasa Srivillibhuthur et al.   DEVELOPMENTAL BIOLOGY

Deoxycholic acid activates epidermal growth factor receptor and promotes intestinal carcinogenesis by ADAM17-dependent ligand release

(2018) Wenxiao Dong et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE

MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis

(2018) Jasmine Chong et al.   NUCLEIC ACIDS RESEARCH

Temporal Regulation of the Bacterial Metabolite Deoxycholate during Colonic Repair Is Critical for Crypt Regeneration

(2018) Umang Jain et al.   Cell Host & Microbe

Microbiota-Derived Lactate Accelerates Intestinal Stem-Cell-Mediated Epithelial Development

(2018) Yong-Soo Lee et al.   Cell Host & Microbe

Campylobacter jejuni promotes colorectal tumorigenesis through the action of cytolethal distending toxin

(2018) Zhen He et al.   GUT

Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential

(2018) Linda Wampach et al.   Nature Communications

Host-microbiota interactions and adaptive immunity

(2017) Kathy D. McCoy et al.   IMMUNOLOGICAL REVIEWS

Glucose feeds the TCA cycle via circulating lactate

(2017) Sheng Hui et al.   NATURE

The shape of the microbiome in early life

(2017) Erika von Mutius   NATURE MEDICINE

Pathogenesis of NEC: Impact of an altered intestinal microbiome

(2017) Josef Neu et al.   SEMINARS IN PERINATOLOGY

Impact of prematurity and nutrition on the developing gut microbiome and preterm infant growth

(2017) Alex Grier et al.   Microbiome

Intestinal dysbiosis in preterm infants preceding necrotizing enterocolitis: a systematic review and meta-analysis

(2017) Mohan Pammi et al.   Microbiome

The Colonic Crypt Protects Stem Cells from Microbiota-Derived Metabolites

(2016) Gerard E. Kaiko et al.   CELL

Diet–microbiota interactions as moderators of human metabolism

(2016) Justin L. Sonnenburg et al.   NATURE

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Intestinal stem cell growth and differentiation on a tubular scaffold with evaluation in small and large animals

(2016) Shahab A Shaffiey et al.   Regenerative Medicine

Fetal, neonatal, and infant microbiome: Perturbations and subsequent effects on brain development and behavior

(2016) Rochellys Diaz Heijtz   Seminars in Fetal & Neonatal Medicine

Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life

(2015) Fredrik Bäckhed et al.   Cell Host & Microbe

The Dynamics of the Human Infant Gut Microbiome in Development and in Progression toward Type 1 Diabetes

(2015) Aleksandar D. Kostic et al.   Cell Host & Microbe

Toll-like Receptor 4-mediated Endoplasmic Reticulum Stress in Intestinal Crypts Induces Necrotizing Enterocolitis

(2014) Amin Afrazi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Commensal bacteria protect against food allergen sensitization

(2014) A. T. Stefka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bifidobacteria Stabilize Claudins at Tight Junctions and Prevent Intestinal Barrier Dysfunction in Mouse Necrotizing Enterocolitis

(2013) Kelly R. Bergmann et al.   AMERICAN JOURNAL OF PATHOLOGY

Stochastic changes over time and not founder effects drive cage effects in microbial community assembly in a mouse model

(2013) Jonathan McCafferty et al.   ISME Journal

The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism

(2013) Gijs den Besten et al.   JOURNAL OF LIPID RESEARCH

Bacterial Diversity in Meconium of Preterm Neonates and Evolution of Their Fecal Microbiota during the First Month of Life

(2013) Laura Moles et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Microbiota matures colonic epithelium through a coordinated induction of cell cycle-related proteins in gnotobiotic rat

(2010) Claire Cherbuy et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

Establishment and development of lactic acid bacteria and bifidobacteria microbiota in breast-milk and the infant gut

(2010) G. Solís et al.   ANAEROBE

Succession of microbial consortia in the developing infant gut microbiome

(2010) J. E. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns

(2010) M. G. Dominguez-Bello et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lactate Inhibits Lipolysis in Fat Cells through Activation of an Orphan G-protein-coupled Receptor, GPR81

(2008) Changlu Liu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE

Intestinal bile acid physiology and pathophysiology

(2008) Olga Martínez-Augustin et al.   WORLD JOURNAL OF GASTROENTEROLOGY