Systems analysis ofcis-regulatory motifs in C4photosynthesis genes using maize and rice leaf transcriptomic data during a process of de-etiolation

Evidence for the role of transposons in the recruitment of cis-regulatory motifs during the evolution of C4 photosynthesis

(2016) Chensi Cao et al.   BMC GENOMICS

An Untranslated cis -Element Regulates the Accumulation of Multiple C 4 Enzymes in Gynandropsis gynandra Mesophyll Cells

(2016) Ben P. Williams et al.   PLANT CELL

Towards an integrative model of C4 photosynthetic subtypes: insights from comparative transcriptome analysis of NAD-ME, NADP-ME, and PEP-CK C4 species

(2014) Andrea Bräutigam et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comparative analyses of C4 and C3 photosynthesis in developing leaves of maize and rice

(2014) Lin Wang et al.   NATURE BIOTECHNOLOGY

Transcript residency on ribosomes reveals a key role for theArabidopsis thalianabundle sheath in sulfur and glucosinolate metabolism

(2014) Sylvain Aubry et al.   PLANT JOURNAL

A Common Histone Modification Code on C4 Genes in Maize and Its Conservation in Sorghum and Setaria italica

(2013) L. Heimann et al.   PLANT PHYSIOLOGY

BBH-LS: an algorithm for computing positional homologs using sequence and gene context similarity

(2012) Melvin Zhang et al.   BMC Systems Biology

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

You're so vein: bundle sheath physiology, phylogeny and evolution in C3 and C4 plants

(2012) HOWARD GRIFFITHS et al.   PLANT CELL AND ENVIRONMENT

Molecular evolution of genes recruited into C4 photosynthesis

(2012) Ben P. Williams et al.   TRENDS IN PLANT SCIENCE

Exploiting the engine of C4 photosynthesis

(2011) R. F. Sage et al.   JOURNAL OF EXPERIMENTAL BOTANY

The role of proteins in C3 plants prior to their recruitment into the C4 pathway

(2011) Sylvain Aubry et al.   JOURNAL OF EXPERIMENTAL BOTANY

The C4 plant lineages of planet Earth

(2011) R. F. Sage et al.   JOURNAL OF EXPERIMENTAL BOTANY

Systems Analysis of a Maize Leaf Developmental Gradient Redefines the Current C4 Model and Provides Candidates for Regulation

(2011) T. R. Pick et al.   PLANT CELL

Evolution of C4Photosynthesis in the GenusFlaveria: How Many and Which Genes Does It Take to Make C4?

(2011) Udo Gowik et al.   PLANT CELL

Multiple Arabidopsis genes primed for recruitment into C4 photosynthesis

(2011) Kaisa Kajala et al.   PLANT JOURNAL

Independent and Parallel Recruitment of Preexisting Mechanisms Underlying C4 Photosynthesis

(2011) N. J. Brown et al.   SCIENCE

The Regulation of Gene Expression Required for C4Photosynthesis

(2010) Julian M. Hibberd et al.   Annual Review of Plant Biology

MSOAR 2.0: Incorporating tandem duplications into ortholog assignment based on genome rearrangement

(2010) Guanqun Shi et al.   BMC BIOINFORMATICS

Phyloscan: locating transcription-regulating binding sites in mixed aligned and unaligned sequence data

(2010) M. J. Palumbo et al.   NUCLEIC ACIDS RESEARCH

Setaria viridis: A Model for C4 Photosynthesis

(2010) T. P. Brutnell et al.   PLANT CELL

An mRNA Blueprint for C4 Photosynthesis Derived from Comparative Transcriptomics of Closely Related C3 and C4 Species

(2010) A. Brautigam et al.   PLANT PHYSIOLOGY

Label-free Quantitative Proteomics Analysis of Etiolated Maize Seedling Leaves during Greening

(2009) Zhuo Shen et al.   MOLECULAR & CELLULAR PROTEOMICS

Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis

(2009) Maria Piques et al.   Molecular Systems Biology

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

(2009) G. Ostlund et al.   NUCLEIC ACIDS RESEARCH

What is the maximum efficiency with which photosynthesis can convert solar energy into biomass?

(2008) Xin-Guang Zhu et al.   CURRENT OPINION IN BIOTECHNOLOGY