Gray whale transcriptome reveals longevity adaptations associated with DNA repair and ubiquitination

rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data

(2019) Elena Bushmanova et al.   GigaScience

The Pfam protein families database in 2019

(2018) Sara El-Gebali et al.   NUCLEIC ACIDS RESEARCH

TimeTree: A Resource for Timelines, Timetrees, and Divergence Times

(2017) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Salmon provides fast and bias-aware quantification of transcript expression

(2017) Rob Patro et al.   NATURE METHODS

RefSeq: an update on prokaryotic genome annotation and curation

(2017) Daniel H Haft et al.   NUCLEIC ACIDS RESEARCH

Human Ageing Genomic Resources: new and updated databases

(2017) Robi Tacutu et al.   NUCLEIC ACIDS RESEARCH

Molecular signatures of longevity: Insights from cross-species comparative studies

(2017) Siming Ma et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Molecular Mechanisms Determining Lifespan in Short- and Long-Lived Species

(2017) Xiao Tian et al.   TRENDS IN ENDOCRINOLOGY AND METABOLISM

UniProt: the universal protein knowledgebase

(2016)   NUCLEIC ACIDS RESEARCH

Design and synthesis of a minimal bacterial genome

(2016) C. A. Hutchison et al.   SCIENCE

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

The transcriptome of the bowhead whale Balaena mysticetus reveals adaptations of the longest-lived mammal

(2016) Inge Seim et al.   Aging-US

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Tree of Life Reveals Clock-Like Speciation and Diversification

(2015) S. Blair Hedges et al.   MOLECULAR BIOLOGY AND EVOLUTION

Insights into the Evolution of Longevity from the Bowhead Whale Genome

(2015) Michael Keane et al.   Cell Reports

UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches

(2014) B. E. Suzek et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Genetics and epigenetics of aging and longevity

(2014) Alexey Moskalev et al.   CELL CYCLE

A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

(2014)   NATURE BIOTECHNOLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Ubiquitin sets the timer: impacts on aging and longevity

(2014) Éva Kevei et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

High-molecular-mass hyaluronan mediates the cancer resistance of the naked mole rat

(2013) Xiao Tian et al.   NATURE

Genome analysis reveals insights into physiology and longevity of the Brandt’s bat Myotis brandtii

(2013) Inge Seim et al.   Nature Communications

Prediction of C. elegans Longevity Genes by Human and Worm Longevity Networks

(2012) Robi Tacutu et al.   PLoS One

Accelerated protein evolution analysis reveals genes and pathways associated with the evolution of mammalian longevity

(2011) Yang Li et al.   AGE

The Human Mitochondrial Transcriptome

(2011) Tim R. Mercer et al.   CELL

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

SProt: sphere-based protein structure similarity algorithm

(2011) Jakub Galgonek et al.   Proteome Science

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

The signaling hubs at the crossroad of longevity and age-related disease networks

(2008) Marina Wolfson et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

NCBI BLAST: a better web interface

(2008) M. Johnson et al.   NUCLEIC ACIDS RESEARCH