Dynamic Flux Balance Analysis to Evaluate the Strain Production Performance on Shikimic Acid Production in Escherichia coli

Evaluation of an S-system root-finding method for estimating parameters in a metabolic reaction model

(2018) Michio Iwata et al.   MATHEMATICAL BIOSCIENCES

Novel technologies combined with traditional metabolic engineering strategies facilitate the construction of shikimate-producing Escherichia coli

(2017) Pengfei Gu et al.   Microbial Cell Factories

Dynamic flux balance modeling to increase the production of high-value compounds in green microalgae

(2016) Robert J. Flassig et al.   Biotechnology for Biofuels

A new parametric method to smooth time-series data of metabolites in metabolic networks

(2016) Atsuko Miyawaki et al.   MATHEMATICAL BIOSCIENCES

Genome-scale modeling for metabolic engineering

(2015) Evangelos Simeonidis et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Metabolic engineering of Escherichia coli for improving shikimate synthesis from glucose

(2014) Xianzhong Chen et al.   BIORESOURCE TECHNOLOGY

DFBAlab: a fast and reliable MATLAB code for dynamic flux balance analysis

(2014) Jose A Gomez et al.   BMC BIOINFORMATICS

Correction: Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks

(2014) Jong Min Lee et al.   PLoS Computational Biology

Dynamic metabolic modeling of a microaerobic yeast co-culture: predicting and optimizing ethanol production from glucose/xylose mixtures

(2013) Timothy J Hanly et al.   Biotechnology for Biofuels

Estimation of kinetic parameters in an S-system equation model for a metabolic reaction system using the Newton–Raphson method

(2013) Michio Iwata et al.   MATHEMATICAL BIOSCIENCES

Shikimate and Phenylalanine Biosynthesis in the Green Lineage

(2013) Takayuki Tohge et al.   Frontiers in Plant Science

Estimation of dynamic flux profiles from metabolic time series data

(2012) I-Chun Chou et al.   BMC Systems Biology

In silico analysis and experimental improvement of taxadiene heterologous biosynthesis in Escherichia coli

(2011) Hailin Meng et al.   BIOTECHNOLOGY AND BIOPROCESS ENGINEERING

Dynamic metabolic flux analysis (DMFA): A framework for determining fluxes at metabolic non-steady state

(2011) Robert W. Leighty et al.   METABOLIC ENGINEERING

A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011

(2011) J. D. Orth et al.   Molecular Systems Biology

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

(2011) Jan Schellenberger et al.   Nature Protocols

Dynamic flux balance modeling of microbial co-cultures for efficient batch fermentation of glucose and xylose mixtures

(2010) Timothy J. Hanly et al.   BIOTECHNOLOGY AND BIOENGINEERING

Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments

(2010) Kai Zhuang et al.   ISME Journal

What is flux balance analysis?

(2010) Jeffrey D Orth et al.   NATURE BIOTECHNOLOGY

Metabolic flux analysis and pharmaceutical production

(2009) Brett A. Boghigian et al.   METABOLIC ENGINEERING

System estimation from metabolic time-series data

(2008) Gautam Goel et al.   BIOINFORMATICS

Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli

(2008) Markus W. Covert et al.   BIOINFORMATICS

Metabolic flux analysis and metabolic engineering of microorganisms

(2007) Hyun Uk Kim et al.   Molecular BioSystems