DFBAlab: a fast and reliable MATLAB code for dynamic flux balance analysis

ORCA: a COBRA toolbox extension for model-driven discovery and analysis

(2013) Longfei Mao et al.   BIOINFORMATICS

The design of long-term effective uranium bioremediation strategy using a community metabolic model

(2012) K. Zhuang et al.   BIOTECHNOLOGY AND BIOENGINEERING

A reliable simulator for dynamic flux balance analysis

(2012) K. Höffner et al.   BIOTECHNOLOGY AND BIOENGINEERING

AlgaGEM – a genome-scale metabolic reconstruction of algae based on the Chlamydomonas reinhardtii genome

(2011) Cristiana Gomes de Oliveira Dal’Molin et al.   BMC GENOMICS

Modeling and Evaluation of CO2Supply and Utilization in Algal Ponds

(2011) Aidong Yang   INDUSTRIAL & ENGINEERING CHEMISTRY RESEARCH

Metabolic network reconstruction of Chlamydomonas offers insight into light-driven algal metabolism

(2011) R. L. Chang et al.   Molecular Systems Biology

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

(2011) Jan Schellenberger et al.   Nature Protocols

Dynamic flux balance modeling of microbial co-cultures for efficient batch fermentation of glucose and xylose mixtures

(2010) Timothy J. Hanly et al.   BIOTECHNOLOGY AND BIOENGINEERING

Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments

(2010) Kai Zhuang et al.   ISME Journal

What is flux balance analysis?

(2010) Jeffrey D Orth et al.   NATURE BIOTECHNOLOGY