Isolation and Characterization of the Novel Phage JD032 and Global Transcriptomic Response during JD032 Infection of Clostridioides difficile Ribotype 078

(Ph)ighting Phages: How Bacteria Resist Their Parasites

(2019) Jakob T. Rostøl et al.   Cell Host & Microbe

Global Transcriptomic Analysis of the Interactions between Phage φAbp1 and Extensively Drug-Resistant Acinetobacter baumannii

(2019) Zichen Yang et al.   mSystems

Biological challenges of phage therapy and proposed solutions: a literature review

(2019) Katherine M Caflisch et al.   Expert Review of Anti-Infective Therapy

Multiple mechanisms drive phage infection efficiency in nearly identical hosts

(2018) Cristina Howard-Varona et al.   ISME Journal

Transcriptomic Analysis of the Campylobacter jejuni Response to T4-Like Phage NCTC 12673 Infection

(2018) Jessica Sacher et al.   Viruses-Basel

Novel therapies and preventative strategies for primary and recurrent Clostridium difficile infections

(2018) Michael G. Dieterle et al.   Annals of the New York Academy of Sciences

Characterization of Bacteriophages Infecting Clinical Isolates of Clostridium difficile

(2018) Wichuda Phothichaisri et al.   Frontiers in Microbiology

Cwp2 from Clostridium difficile exhibits an extended three domain fold and cell adhesion in vitro

(2017) William J. Bradshaw et al.   FEBS Journal

Comparative transcriptomics analyses reveal the conservation of an ancestral infectious strategy in two bacteriophage genera

(2017) Bob G Blasdel et al.   ISME Journal

Zoonotic Transfer of Clostridium difficile Harboring Antimicrobial Resistance between Farm Animals and Humans

(2017) C. W. Knetsch et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Characterization and complete genome of the virulent Myoviridae phage JD007 active against a variety of Staphylococcus aureus isolates from different hospitals in Shanghai, China

(2017) Zelin Cui et al.   Virology Journal

Regulation of infection efficiency in a globally abundant marine Bacteriodetes virus

(2016) Cristina Howard-Varona et al.   ISME Journal

Global Transcriptomic Analysis of Interactions between Pseudomonas aeruginosa and Bacteriophage PaP3

(2016) Xia Zhao et al.   Scientific Reports

Next-Generation “-omics” Approaches Reveal a Massive Alteration of Host RNA Metabolism during Bacteriophage Infection of Pseudomonas aeruginosa

(2016) Anne Chevallereau et al.   PLoS Genetics

The Global Reciprocal Reprogramming between Mycobacteriophage SWU1 and Mycobacterium Reveals the Molecular Strategy of Subversion and Promotion of Phage Infection

(2016) Xiangyu Fan et al.   Frontiers in Microbiology

Clostridium difficile infection

(2016) Wiep Klaas Smits et al.   Nature Reviews Disease Primers

Bacteriophage Combinations Significantly Reduce Clostridium difficile GrowthIn Vitroand ProliferationIn Vivo

(2015) Janet Y. Nale et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Transcriptomic response during phage infection of a marine cyanobacterium under phosphorus-limited conditions

(2015) Xingqin Lin et al.   ENVIRONMENTAL MICROBIOLOGY

Transcriptome dynamics of a broad host-range cyanophage and its hosts

(2015) Shany Doron et al.   ISME Journal

TheClostridium difficilecell wall protein CwpV confers phase-variable phage resistance

(2015) Ognjen Sekulovic et al.   MOLECULAR MICROBIOLOGY

Revisiting phage therapy: new applications for old resources

(2015) Franklin L. Nobrega et al.   TRENDS IN MICROBIOLOGY

A Taxonomic Review of Clostridium difficile Phages and Proposal of a Novel Genus, “Phimmp04likevirus”

(2015) Katherine Hargreaves et al.   Viruses-Basel

Global Transcriptional Response of Clostridium difficile Carrying the ϕCD38-2 Prophage

(2014) Ognjen Sekulovic et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Functional elucidation of antibacterial phage ORFans targetingPseudomonas aeruginosa

(2014) Jeroen Wagemans et al.   CELLULAR MICROBIOLOGY

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Evaluation of bacteriophage therapy to control Clostridium difficile and toxin production in an in vitro human colon model system

(2013) Emma Meader et al.   ANAEROBE

Lytic Infection of Lactococcus lactis by Bacteriophages Tuc2009 and c2 Triggers Alternative Transcriptional Host Responses

(2013) S. Ainsworth et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Relationship Between Bacterial Strain Type, Host Biomarkers, and Mortality in Clostridium difficile Infection

(2013) A. Sarah Walker et al.   CLINICAL INFECTIOUS DISEASES

Revenge of the phages: defeating bacterial defences

(2013) Julie E. Samson et al.   NATURE REVIEWS MICROBIOLOGY

High-resolution view of bacteriophage lambda gene expression by ribosome profiling

(2013) X. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Multifaceted Study of Pseudomonas aeruginosa Shutdown by Virulent Podovirus LUZ19

(2013) R. Lavigne et al.   mBio

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Integration-Dependent Bacteriophage Immunity Provides Insights into the Evolution of Genetic Switches

(2012) Gregory W. Broussard et al.   MOLECULAR CELL

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

In vivo lysogenization of a Clostridium difficile bacteriophage ФCD119

(2011) Govind Revathi et al.   ANAEROBE

Prophage-Stimulated Toxin Production in Clostridium difficile NAP1/027 Lysogens

(2011) O. Sekulovic et al.   JOURNAL OF BACTERIOLOGY

The Key Sigma Factor of Transition Phase, SigH, Controls Sporulation, Metabolism, and Virulence Factor Expression in Clostridium difficile

(2011) L. Saujet et al.   JOURNAL OF BACTERIOLOGY

Genetic Response to Bacteriophage Infection in Lactococcus lactis Reveals a Four-Strand Approach Involving Induction of Membrane Stress Proteins, D-Alanylation of the Cell Wall, Maintenance of Proton Motive Force, and Energy Conservation

(2011) V. Fallico et al.   JOURNAL OF VIROLOGY

Bacteriophage treatment significantly reduces viable Clostridium difficile and prevents toxin production in an in vitro model system

(2010) Emma Meader et al.   ANAEROBE

Evaluation of candidate reference genes in Clostridium difficile for gene expression normalization

(2010) Devon Metcalf et al.   ANAEROBE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

The role of interactions between phage and bacterial proteins within the infected cell: a diverse and puzzling interactome

(2009) Bart Roucourt et al.   ENVIRONMENTAL MICROBIOLOGY

Bacteriophage-Mediated Toxin Gene Regulation in Clostridium difficile

(2009) R. Govind et al.   JOURNAL OF VIROLOGY

Emergence ofClostridium difficileInfection Due to a New Hypervirulent Strain, Polymerase Chain Reaction Ribotype 078

(2008) Abraham Goorhuis et al.   CLINICAL INFECTIOUS DISEASES

Clinical Recognition and Diagnosis ofClostridium difficileInfection

(2008) John G. Bartlett et al.   CLINICAL INFECTIOUS DISEASES