Monkeypox virus emergence in wild chimpanzees reveals distinct clinical outcomes and viral diversity

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

A case of imported Monkeypox in Singapore

(2019) Oon Tek Ng et al.   LANCET INFECTIOUS DISEASES

Species diversity concurrently dilutes and amplifies transmission in a zoonotic host–pathogen system through competing mechanisms

(2018) Angela D. Luis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Understanding orthopoxvirus host range and evolution: from the enigmatic to the usual suspects

(2018) Mary G Reynolds et al.   Current Opinion in Virology

Emergence of Monkeypox — West and Central Africa, 1970–2017

(2018) Kara N. Durski et al.   MMWR-MORBIDITY AND MORTALITY WEEKLY REPORT

Ghosts of infections past: using archival samples to understand a century of monkeypox virus prevalence among host communities across space and time

(2018) Madeline S. Tiee et al.   Royal Society Open Science

Two cases of monkeypox imported to the United Kingdom, September 2018

(2018) Aisling Vaughan et al.   Eurosurveillance

Monkeypox — Enhancing public health preparedness for an emerging lethal human zoonotic epidemic threat in the wake of the smallpox post-eradication era

(2018) Eskild Petersen et al.   INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES

metaSPAdes: a new versatile metagenomic assembler

(2017) Sergey Nurk et al.   GENOME RESEARCH

Persistent anthrax as a major driver of wildlife mortality in a tropical rainforest

(2017) Constanze Hoffmann et al.   NATURE

Seasonal recurrence of cowpox virus outbreaks in captive cheetahs (Acinonyx jubatus)

(2017) Julia Stagegaard et al.   PLoS One

Comment: Characterization of Two Historic Smallpox Specimens from a Czech Museum

(2017) Ashleigh Porter et al.   Viruses-Basel

Genomic and phenotypic characterization of myxoma virus from Great Britain reveals multiple evolutionary pathways distinct from those in Australia

(2017) Peter J. Kerr et al.   PLoS Pathogens

Puumala hantavirus infections in bank vole populations: host and virus dynamics in Central Europe

(2017) Daniela Reil et al.   BMC ECOLOGY

Forest extent and deforestation in tropical Africa since 1900

(2017) Julie C. Aleman et al.   Nature Ecology & Evolution

Finishing monkeypox genomes from short reads: assembly analysis and a neural network method

(2016) Kun Zhao et al.   BMC GENOMICS

17 th Century Variola Virus Reveals the Recent History of Smallpox

(2016) Ana T. Duggan et al.   CURRENT BIOLOGY

Assessing the feasibility of fly based surveillance of wildlife infectious diseases

(2016) Constanze Hoffmann et al.   Scientific Reports

Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus

(2015) Kristian G. Andersen et al.   CELL

obitools: aunix-inspired software package for DNA metabarcoding

(2015) Frédéric Boyer et al.   Molecular Ecology Resources

A Phylogeographic Investigation of African Monkeypox

(2015) Yoshinori Nakazawa et al.   Viruses-Basel

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Prediction of Steps in the Evolution of Variola Virus Host Range

(2014) Chad Smithson et al.   PLoS One

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Carrion fly-derived DNA as a tool for comprehensive and cost-effective assessment of mammalian biodiversity

(2013) Sébastien Calvignac-Spencer et al.   MOLECULAR ECOLOGY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

A retrospective study of the orthopoxvirus molecular evolution

(2012) Igor V. Babkin et al.   INFECTION GENETICS AND EVOLUTION

Improving the Accuracy of Demographic and Molecular Clock Model Comparison While Accommodating Phylogenetic Uncertainty

(2012) Guy Baele et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

The Vaccinia Virus O1 Protein Is Required for Sustained Activation of Extracellular Signal-Regulated Kinase 1/2 and Promotes Viral Virulence

(2011) M. Schweneker et al.   JOURNAL OF VIROLOGY

An In silico approach for the evaluation of DNA barcodes

(2010) Gentile Ficetola et al.   BMC GENOMICS

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Orthopoxvirus Genome Evolution: The Role of Gene Loss

(2010) Robert Curtis Hendrickson et al.   Viruses-Basel

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Virulence and pathophysiology of the Congo Basin and West African strains of monkeypox virus in non-human primates

(2009) M. Saijo et al.   JOURNAL OF GENERAL VIROLOGY

Multicolour, multiplex real-time PCR assay for the detection of human-pathogenic poxviruses

(2009) Kati Schroeder et al.   MOLECULAR AND CELLULAR PROBES

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Integrative approaches to the study of primate infectious disease: Implications for biodiversity conservation and global health

(2008) Thomas R. Gillespie et al.   AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY

Pandemic Human Viruses Cause Decline of Endangered Great Apes

(2008) Sophie Köndgen et al.   CURRENT BIOLOGY

Rates of evolutionary change in viruses: patterns and determinants

(2008) Siobain Duffy et al.   NATURE REVIEWS GENETICS