Finishing monkeypox genomes from short reads: assembly analysis and a neural network method

One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly

(2015) Sergey Koren et al.   CURRENT OPINION IN MICROBIOLOGY

Sabin Vaccine Reversion in the Field: a Comprehensive Analysis of Sabin-Like Poliovirus Isolates in Nigeria

(2015) Michael Famulare et al.   JOURNAL OF VIROLOGY

Synergistic effect of repulsive inhibition in synchronization of excitatory networks

(2015) Igor Belykh et al.   PHYSICAL REVIEW E

Detection of Human Monkeypox in the Republic of the Congo Following Intensive Community Education

(2013) Mary G. Reynolds et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

GAGE-B: an evaluation of genome assemblers for bacterial organisms

(2013) Tanja Magoc et al.   BIOINFORMATICS

Self-adaptive autowave pulse-coupled neural network for shortest-path problem

(2013) Xiaojun Li et al.   NEUROCOMPUTING

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

(2013) Keith R Bradnam et al.   GigaScience

A novel neural network method for shortest path tree computation

(2012) Hong Qu et al.   APPLIED SOFT COMPUTING

De novo genome assembly: what every biologist should know

(2012) Monya Baker   NATURE METHODS

Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011

(2012) Y. H. Grad et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Toward almost closed genomes with GapFiller

(2012) Marten Boetzer et al.   GENOME BIOLOGY

Efficient Shortest-Path-Tree Computation in Network Routing Based on Pulse-Coupled Neural Networks

(2012) Hong Qu et al.   IEEE Transactions on Cybernetics

A novel algorithm for all pairs shortest path problem based on matrix multiplication and pulse coupled neural network

(2011) Yudong Zhang et al.   DIGITAL SIGNAL PROCESSING

Assemblathon 1: A competitive assessment of de novo short read assembly methods

(2011) D. Earl et al.   GENOME RESEARCH

GAGE: A critical evaluation of genome assemblies and assembly algorithms

(2011) S. L. Salzberg et al.   GENOME RESEARCH

The Genome of Yoka Poxvirus

(2011) G. Zhao et al.   JOURNAL OF VIROLOGY

A decade’s perspective on DNA sequencing technology

(2011) Elaine R. Mardis   NATURE

How to apply de Bruijn graphs to genome assembly

(2011) Phillip E C Compeau et al.   NATURE BIOTECHNOLOGY

A Practical Comparison of De Novo Genome Assembly Software Tools for Next-Generation Sequencing Technologies

(2011) Wenyu Zhang et al.   PLoS One

Assembly of large genomes using second-generation sequencing

(2010) M. C. Schatz et al.   GENOME RESEARCH

Assembly algorithms for next-generation sequencing data

(2010) Jason R. Miller et al.   GENOMICS

ABACAS: algorithm-based automatic contiguation of assembled sequences

(2009) S. Assefa et al.   BIOINFORMATICS

A modified pulse coupled neural network for shortest-path problem

(2009) Xiaobin Wang et al.   NEUROCOMPUTING

ALLPATHS: De novo assembly of whole-genome shotgun microreads

(2008) J. Butler et al.   GENOME RESEARCH

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Melittin, a Major Component of Bee Venom, Sensitizes Human Hepatocellular Carcinoma Cells to Tumor Necrosis Factor-related Apoptosis-inducing Ligand (TRAIL)-induced Apoptosis by Activating CaMKII-TAK1-JNK/p38 and Inhibiting IκBα Kinase-NFκB

(2008) Chen Wang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY