Genomic analysis of variability in Delta-toxin levels between Staphylococcus aureus strains

Corynebacterium pseudodiphtheriticum Exploits Staphylococcus aureus Virulence Components in a Novel Polymicrobial Defense Strategy

(2019) Britney L. Hardy et al.   mBio

Dual gene expression analysis identifies factors associated with Staphylococcus aureus virulence in diabetic mice

(2019) Rudy Jacquet et al.   INFECTION AND IMMUNITY

BIPSPI: a method for the prediction of Partner-Specific Protein-Protein Interfaces

(2018) Ruben Sanchez-Garcia et al.   BIOINFORMATICS

Phylogenetic comparative methods on phylogenetic networks with reticulations

(2018) Paul Bastide et al.   SYSTEMATIC BIOLOGY

Developing an in silico minimum inhibitory concentration panel test for Klebsiella pneumoniae

(2018) Marcus Nguyen et al.   Scientific Reports

A Data Driven Model for Predicting RNA-Protein Interactions based on Gradient Boosting Machine

(2018) Dharm Skandh Jain et al.   Scientific Reports

Genetic requirements for Staphylococcus aureus nitric oxide resistance and virulence

(2018) Melinda R. Grosser et al.   PLoS Pathogens

Staphylococcus aureus viewed from the perspective of 40,000+ genomes

(2018) Robert A. Petit et al.   PeerJ

Codon usage influences fitness through RNA toxicity

(2018) Pragya Mittal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Enhanced Prediction of Hot Spots at Protein-Protein Interfaces Using Extreme Gradient Boosting

(2018) Hao Wang et al.   Scientific Reports

Using machine learning to predict antimicrobial minimum inhibitory concentrations and associated genomic features for nontyphoidal Salmonella

(2018) Marcus Nguyen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

M6AMRFS: Robust Prediction of N6-Methyladenosine Sites With Sequence-Based Features in Multiple Species

(2018) Xiaoli Qiang et al.   Frontiers in Genetics

PhyloNetworks: A Package for Phylogenetic Networks

(2017) Claudia Solís-Lemus et al.   MOLECULAR BIOLOGY AND EVOLUTION

Julia: A Fresh Approach to Numerical Computing

(2017) Jeff Bezanson et al.   SIAM REVIEW

Bacterial toxins: Offensive, defensive, or something else altogether?

(2017) Justine K. Rudkin et al.   PLoS Pathogens

Clonal differences in Staphylococcus aureus bacteraemia-associated mortality

(2017) Mario Recker et al.   Nature Microbiology

Microbial genome-wide association studies: lessons from human GWAS

(2016) Robert A. Power et al.   NATURE REVIEWS GENETICS

Natural mutations in aStaphylococcus aureusvirulence regulator attenuate cytotoxicity but permit bacteremia and abscess formation

(2016) Sudip Das et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes

(2016) John A. Lees et al.   Nature Communications

Identifying lineage effects when controlling for population structure improves power in bacterial association studies

(2016) Sarah G. Earle et al.   Nature Microbiology

Roary: rapid large-scale prokaryote pan genome analysis

(2015) Andrew J. Page et al.   BIOINFORMATICS

AraC-Type Regulator Rsp Adapts Staphylococcus aureus Gene Expression to Acute Infection

(2015) Tianming Li et al.   INFECTION AND IMMUNITY

Clinical MRSA isolates from skin and soft tissue infections show increased in vitro production of phenol soluble modulins

(2015) Nicholas R. Berlon et al.   JOURNAL OF INFECTION

Quality of Life in Families with Children with Atopic Dermatitis

(2015) Nives Pustišek et al.   PEDIATRIC DERMATOLOGY

Methicillin-Resistant Staphylococcus aureus Adaptation to Human Keratinocytes

(2015) Grace Soong et al.   mBio

Complete Bypass of Restriction Systems for Major Staphylococcus aureus Lineages

(2015) Ian R. Monk et al.   mBio

Evolutionary Trade-Offs Underlie the Multi-faceted Virulence of Staphylococcus aureus

(2015) Maisem Laabei et al.   PLOS BIOLOGY

Toxin-Induced Necroptosis Is a Major Mechanism of Staphylococcus aureus Lung Damage

(2015) Kipyegon Kitur et al.   PLoS Pathogens

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Predicting the virulence of MRSA from its genome sequence

(2014) M. Laabei et al.   GENOME RESEARCH

Cytotoxic Virulence Predicts Mortality in Nosocomial Pneumonia Due to Methicillin-ResistantStaphylococcus aureus

(2014) Hannah R. Rose et al.   JOURNAL OF INFECTIOUS DISEASES

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

(2014) Nicholas J. Croucher et al.   NUCLEIC ACIDS RESEARCH

Characterizing the genetic basis of bacterial phenotypes using genome-wide association studies: a new direction for bacteriology

(2014) Timothy D Read et al.   Genome Medicine

SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

(2014) Michael Inouye et al.   Genome Medicine

Production of an Attenuated Phenol-Soluble Modulin Variant Unique to the MRSA Clonal Complex 30 Increases Severity of Bloodstream Infection

(2014) Gordon Y. C. Cheung et al.   PLoS Pathogens

Staphylococcus aureus toxins

(2013) Michael Otto   CURRENT OPINION IN MICROBIOLOGY

Staphylococcus aureus toxins – Their functions and genetics

(2013) Dorothee Grumann et al.   INFECTION GENETICS AND EVOLUTION

Community-associated MRSA: What makes them special?

(2013) Michael Otto   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Staphylococcus δ-toxin induces allergic skin disease by activating mast cells

(2013) Yuumi Nakamura et al.   NATURE

Phenol-soluble modulins and staphylococcal infection

(2013) Andreas Peschel et al.   NATURE REVIEWS MICROBIOLOGY

A Genetic Resource for Rapid and Comprehensive Phenotype Screening of Nonessential Staphylococcus aureus Genes

(2013) P. D. Fey et al.   mBio

The WalKR System Controls Major Staphylococcal Virulence Genes and Is Involved in Triggering the Host Inflammatory Response

(2012) Aurélia Delauné et al.   INFECTION AND IMMUNITY

Methicillin Resistance Reduces the Virulence of Healthcare-Associated Methicillin-Resistant Staphylococcus aureus by Interfering With the agr Quorum Sensing System

(2012) Justine K. Rudkin et al.   JOURNAL OF INFECTIOUS DISEASES

Genome-wide efficient mixed-model analysis for association studies

(2012) Xiang Zhou et al.   NATURE GENETICS

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

From genotype to phenotype: can systems biology be used to predict Staphylococcus aureus virulence?

(2012) Nicholas K. Priest et al.   NATURE REVIEWS MICROBIOLOGY

Detection of Staphylococcus aureus Delta-Toxin Production by Whole-Cell MALDI-TOF Mass Spectrometry

(2012) Julie Gagnaire et al.   PLoS One

Transforming the Untransformable: Application of Direct Transformation To Manipulate Genetically Staphylococcus aureus and Staphylococcus epidermidis

(2012) I. R. Monk et al.   mBio

Staphylococcal superantigens in colonization and disease

(2012) Stacey X. Xu et al.   Frontiers in Cellular and Infection Microbiology

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Quorum Sensing Inhibitors ofStaphylococcus aureusfrom Italian Medicinal Plants

(2010) Cassandra Quave et al.   PLANTA MEDICA

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Identification of Factors Contributing to T-Cell Toxicity of Staphylococcus aureus Clinical Isolates

(2008) J. Collins et al.   JOURNAL OF CLINICAL MICROBIOLOGY