The day‐to‐day stability of the ruminal and fecal microbiota in lactating dairy cows

A meta-analysis of the bovine gastrointestinal tract microbiota

(2019) Devin B Holman et al.   FEMS MICROBIOLOGY ECOLOGY

The ruminal bacterial community in lactating dairy cows has limited variation on a day-to-day basis

(2019) Joseph H. Skarlupka et al.   Journal of Animal Science and Biotechnology

Microbiome-related metabolite changes in gut tissue, cecum content and feces of rats treated with antibiotics

(2018) C. Behr et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY

Effect of Limit-Fed Diets With Different Forage to Concentrate Ratios on Fecal Bacterial and Archaeal Community Composition in Holstein Heifers

(2018) Jun Zhang et al.   Frontiers in Microbiology

Assessment of microbiome changes after rumen transfaunation: implications on improving feed efficiency in beef cattle

(2018) Mi Zhou et al.   Microbiome

Changes in rumen bacterial and archaeal communities over the transition period in primiparous Holstein dairy cows

(2018) Zhigang Zhu et al.   JOURNAL OF DAIRY SCIENCE

Gut microbiota and intestinal FXR mediate the clinical benefits of metformin

(2018) Lulu Sun et al.   NATURE MEDICINE

Unraveling the Fecal Microbiota and Metagenomic Functional Capacity Associated with Feed Efficiency in Pigs

(2017) Hui Yang et al.   Frontiers in Microbiology

Comparison of rumen bacteria distribution in original rumen digesta, rumen liquid and solid fractions in lactating Holstein cows

(2017) Shoukun Ji et al.   Journal of Animal Science and Biotechnology

Specific microbiome-dependent mechanisms underlie the energy harvest efficiency of ruminants

(2016) Sheerli Kruger Ben Shabat et al.   ISME Journal

Phylogenetic Diversity, Distribution, and Cophylogeny of Giant Bacteria (Epulopiscium) with their Surgeonfish Hosts in the Red Sea

(2016) Sou Miyake et al.   Frontiers in Microbiology

Comparative studies of the composition of bacterial microbiota associated with the ruminal content, ruminal epithelium and in the faeces of lactating dairy cows

(2016) Jun-hua Liu et al.   Microbial Biotechnology

Ruminal Bacterial Community Composition in Dairy Cows Is Dynamic over the Course of Two Lactations and Correlates with Feed Efficiency

(2015) Kelsea A. Jewell et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity of the Intestinal Bacteria of Cattle Fed on Diets with Different Doses of Gelatinized Starch-Urea

(2015) Zhenliang Cui et al.   INDIAN JOURNAL OF MICROBIOLOGY

Diet strongly influences the gut microbiota of surgeonfishes

(2015) Sou Miyake et al.   MOLECULAR ECOLOGY

Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range

(2015) Gemma Henderson et al.   Scientific Reports

Characterising the bacterial microbiota across the gastrointestinal tracts of dairy cattle: membership and potential function

(2015) Shengyong Mao et al.   Scientific Reports

Dietary Enterococcus faecalis LAB31 Improves Growth Performance, Reduces Diarrhea, and Increases Fecal Lactobacillus Number of Weaned Piglets

(2015) Yuanliang Hu et al.   PLoS One

Akkermansia muciniphila inversely correlates with the onset of inflammation, altered adipose tissue metabolism and metabolic disorders during obesity in mice

(2015) Marc Schneeberger et al.   Scientific Reports

Bacterial communities in the rumen of Holstein heifers differ when fed orchardgrass as pasture vs. hay

(2014) Riazuddin Mohammed et al.   Frontiers in Microbiology

Use of Pyrosequencing to Characterize the Microbiota in the Ileum of Goats Fed with Increasing Proportion of Dietary Grain

(2013) Shengyong Mao et al.   CURRENT MICROBIOLOGY

Exploring the bovine rumen bacterial community from birth to adulthood

(2013) Elie Jami et al.   ISME Journal

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Comparison of the Distal Gut Microbiota from People and Animals in Africa

(2013) Richard J. Ellis et al.   PLoS One

Effect of DNA Extraction Methods and Sampling Techniques on the Apparent Structure of Cow and Sheep Rumen Microbial Communities

(2013) Gemma Henderson et al.   PLoS One

Characterizing the microbiota across the gastrointestinal tract of a Brazilian Nelore steer

(2013) Marcelo Nagem Valério de Oliveira et al.   VETERINARY MICROBIOLOGY

Rumen microbial and fermentation characteristics are affected differently by bacterial probiotic supplementation during induced lactic and subacute acidosis in sheep

(2012) Abderzak Lettat et al.   BMC MICROBIOLOGY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Antimicrobial susceptibility testing of bovine digital dermatitis treponemes identifies macrolides for in vivo efficacy testing

(2012) N.J. Evans et al.   VETERINARY MICROBIOLOGY

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows

(2011) Filipa Godoy-Vitorino et al.   ISME Journal

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Clostridiaceae and Enterobacteriaceae as active fermenters in earthworm gut content

(2010) Pia K Wüst et al.   ISME Journal

Evaluation of bacterial diversity in the rumen and feces of cattle fed different levels of dried distillers grains plus solubles using bacterial tag-encoded FLX amplicon pyrosequencing1

(2010) T. R. Callaway et al.   JOURNAL OF ANIMAL SCIENCE

Xylan degradation, a metabolic property shared by rumen and human colonic Bacteroidetes

(2010) Dylan Dodd et al.   MOLECULAR MICROBIOLOGY

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial gut symbionts are tightly linked with the evolution of herbivory in ants

(2009) Jacob A. Russell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant Cell Wall Breakdown by Anaerobic Microorganisms from the Mammalian Digestive Tract

(2008) Harry J. Flint et al.   Annals of the New York Academy of Sciences