An active texture-based digital atlas enables automated mapping of structures and markers across brains

Circuits in the Rodent Brainstem that Control Whisking in Concert with Other Orofacial Motor Actions

(2018) Lauren E. McElvain et al.   NEUROSCIENCE

A high-resolution probabilistic in vivo atlas of human subcortical brain nuclei

(2018) Wolfgang M. Pauli et al.   Scientific Data

Label-free volumetric optical imaging of intact murine brains

(2017) Jian Ren et al.   Scientific Reports

A review on brain structures segmentation in magnetic resonance imaging

(2016) Sandra González-Villà et al.   ARTIFICIAL INTELLIGENCE IN MEDICINE

Mapping of Brain Activity by Automated Volume Analysis of Immediate Early Genes

(2016) Nicolas Renier et al.   CELL

Supratrigeminal Bilaterally Projecting Neurons Maintain Basal Tone and Enable Bilateral Phasic Activation of Jaw-Closing Muscles

(2016) E. Stanek et al.   JOURNAL OF NEUROSCIENCE

High-throughput dual-colour precision imaging for brain-wide connectome with cytoarchitectonic landmarks at the cellular level

(2016) Hui Gong et al.   Nature Communications

A platform for brain-wide imaging and reconstruction of individual neurons

(2016) Michael N Economo et al.   eLife

Clarifying Tissue Clearing

(2015) Douglas S. Richardson et al.   CELL

Exploration and visualization of connectivity in the adult mouse brain

(2015) David Feng et al.   METHODS

Neuroinformatics of the Allen Mouse Brain Connectivity Atlas

(2015) Leonard Kuan et al.   METHODS

Whole-brain activity mapping onto a zebrafish brain atlas

(2015) Owen Randlett et al.   NATURE METHODS

Possum—A Framework for Three-Dimensional Reconstruction of Brain Images from Serial Sections

(2015) Piotr Majka et al.   NEUROINFORMATICS

Architectonic Mapping of the Human Brain beyond Brodmann

(2015) Katrin Amunts et al.   NEURON

High-Throughput Method of Whole-Brain Sectioning, Using the Tape-Transfer Technique

(2015) Vadim Pinskiy et al.   PLoS One

Neural Networks of the Mouse Neocortex

(2014) Brian Zingg et al.   CELL

A mesoscale connectome of the mouse brain

(2014) Seung Wook Oh et al.   NATURE

Waxholm Space atlas of the Sprague Dawley rat brain

(2014) Eszter A. Papp et al.   NEUROIMAGE

Molecular neuroanatomy: a generation of progress

(2014) Jonathan D. Pollock et al.   TRENDS IN NEUROSCIENCES

New Modules Are Added to Vibrissal Premotor Circuitry with the Emergence of Exploratory Whisking

(2013) Jun Takatoh et al.   NEURON

Neuronal Morphology Goes Digital: A Research Hub for Cellular and System Neuroscience

(2013) Ruchi Parekh et al.   NEURON

Transcription factors define the neuroanatomical organization of the medullary reticular formation

(2013) Paul A. Gray   Frontiers in Neuroanatomy

ViBE-Z: a framework for 3D virtual colocalization analysis in zebrafish larval brains

(2012) Olaf Ronneberger et al.   NATURE METHODS

Serial two-photon tomography for automated ex vivo mouse brain imaging

(2012) Timothy Ragan et al.   NATURE METHODS

BrainAligner: 3D registration atlases of Drosophila brains

(2011) Hanchuan Peng et al.   NATURE METHODS

Automated atlas-based segmentation of NISSL-stained mouse brain sections using supervised learning

(2011) O. V. Senyukova et al.   PROGRAMMING AND COMPUTER SOFTWARE

Three-Dimensional Reconstruction of Brain-wide Wiring Networks in Drosophila at Single-Cell Resolution

(2010) Ann-Shyn Chiang et al.   CURRENT BIOLOGY

Waxholm Space: An image-based reference for coordinating mouse brain research

(2010) G. Allan Johnson et al.   NEUROIMAGE

Foundational model of structural connectivity in the nervous system with a schema for wiring diagrams, connectome, and basic plan architecture

(2010) L. W. Swanson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Advances in Light Microscopy for Neuroscience

(2009) Brian A. Wilt et al.   Annual Review of Neuroscience

elastix: A Toolbox for Intensity-Based Medical Image Registration

(2009) S. Klein et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Correlations of Neuronal and Microvascular Densities in Murine Cortex Revealed by Direct Counting and Colocalization of Nuclei and Vessels

(2009) P. S. Tsai et al.   JOURNAL OF NEUROSCIENCE

An anatomic gene expression atlas of the adult mouse brain

(2009) Lydia Ng et al.   NATURE NEUROSCIENCE

Exploration and visualization of gene expression with neuroanatomy in the adult mouse brain

(2008) Christopher Lau et al.   BMC BIOINFORMATICS