Habitat Disturbances Modulate the Barrier Effect of Resident Soil Microbiota on Listeria monocytogenes Invasion Success

The impact of failure: unsuccessful bacterial invasions steer the soil microbial community away from the invader’s niche

(2018) C. A. Mallon et al.   ISME Journal

Bipartite interactions, antibiotic production and biosynthetic potential of the Arabidopsis leaf microbiome

(2018) Eric J. N. Helfrich et al.   Nature Microbiology

Compounded Disturbance Chronology Modulates the Resilience of Soil Microbial Communities and N-Cycle Related Functions

(2018) Kadiya Calderón et al.   Frontiers in Microbiology

Microbial interactions and community assembly at microscales

(2016) Otto X Cordero et al.   CURRENT OPINION IN MICROBIOLOGY

A conceptual framework for invasion in microbial communities

(2016) Marta Kinnunen et al.   ISME Journal

Exploring the Diversity and Antimicrobial Potential of Marine Actinobacteria from the Comau Fjord in Northern Patagonia, Chile

(2016) Agustina Undabarrena et al.   Frontiers in Microbiology

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Survival of Listeria monocytogenes in Soil Requires AgrA-Mediated Regulation

(2015) Anne-Laure Vivant et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fungal invasion of the rhizosphere microbiome

(2015) Emilie Chapelle et al.   ISME Journal

Resource utilization capability of bacteria predicts their invasion potential in soil

(2015) Chao Ma et al.   SOIL BIOLOGY & BIOCHEMISTRY

Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health

(2015) Zhong Wei et al.   Nature Communications

Characterization of Bacteriocin like inhibitory substance produced by a new Strain Brevibacillus borstelensis AG1 Isolated from 'Marcha'

(2014) Nivedita Sharma et al.   BRAZILIAN JOURNAL OF MICROBIOLOGY

Development of a Prokaryotic Universal Primer for Simultaneous Analysis of Bacteria and Archaea Using Next-Generation Sequencing

(2014) Shunsuke Takahashi et al.   PLoS One

Interaction between the Microbial Community and Invading Escherichia coli O157:H7 in Soils from Vegetable Fields

(2013) Zhiyuan Yao et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Biotic and Abiotic Soil Properties Influence Survival of Listeria monocytogenes in Soil

(2013) Aude Locatelli et al.   PLoS One

Microbial Diversity and Structure Are Drivers of the Biological Barrier Effect against Listeria monocytogenes in Soil

(2013) Anne-Laure Vivant et al.   PLoS One

Listeria monocytogenes, a down-to-earth pathogen

(2013) Anne-Laure Vivant et al.   Frontiers in Cellular and Infection Microbiology

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Disturbance Promotes Non-Indigenous Bacterial Invasion in Soil Microcosms: Analysis of the Roles of Resource Availability and Community Structure

(2012) Manqiang Liu et al.   PLoS One

Microbial diversity determines the invasion of soil by a bacterial pathogen

(2012) J. D. van Elsas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Factors affecting survival of Listeria monocytogenes and Listeria innocua in soil samples

(2011) Heather P. McLaughlin et al.   ARCHIVES OF MICROBIOLOGY

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Changes in Gene Expression during Adaptation of Listeria monocytogenes to the Soil Environment

(2011) Pascal Piveteau et al.   PLoS One

Ecosystem Consequences of Biological Invasions

(2010) Joan G. Ehrenfeld   Annual Review of Ecology Evolution and Systematics

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

UniFrac: an effective distance metric for microbial community comparison

(2010) Catherine Lozupone et al.   ISME Journal

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

(2008) Christian L. Lauber et al.   SOIL BIOLOGY & BIOCHEMISTRY