A Multi-Omics Analysis Suggests Links Between the Differentiated Surface Metabolome and Epiphytic Microbiota Along the Thallus of a Mediterranean Seaweed Holobiont

Changes in Bacterioplankton Communities Resulting From Direct and Indirect Interactions With Trace Metal Gradients in an Urbanized Marine Coastal Area

(2019) Clément Coclet et al.   Frontiers in Microbiology

High metabolic variation for seaweeds in response to environmental changes: a case study of the brown algae Lobophora in coral reefs

(2019) Julie Gaubert et al.   Scientific Reports

Mapping the Surface Microbiome and Metabolome of Brown Seaweed Fucus vesiculosus by Amplicon Sequencing, Integrated Metabolomics and Imaging Techniques

(2019) Delphine Parrot et al.   Scientific Reports

Future climate change is predicted to affect the microbiome and condition of habitat-forming kelp

(2019) Zhiguang Qiu et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Temporal covariation of epibacterial community and surface metabolome in the Mediterranean seaweed holobiont Taonia atomaria

(2019) Benoît Paix et al.   ENVIRONMENTAL MICROBIOLOGY

Natural fumigation as a mechanism for volatile transport between flower organs

(2019) Benoît Boachon et al.   Nature Chemical Biology

Disentangling the Influence of Environment, Host Specificity and Thallus Differentiation on Bacterial Communities in Siphonous Green Seaweeds

(2019) Kathryn Lee Morrissey et al.   Frontiers in Microbiology

Shear Stress as a Major Driver of Marine Biofilm Communities in the NW Mediterranean Sea

(2019) Elisa C. P. Catão et al.   Frontiers in Microbiology

Macroalgal-bacterial interactions: Role of dimethylsulfoniopropionate in microbial gardening by Ulva (Chlorophyta)

(2018) Ralf W. Kessler et al.   MOLECULAR ECOLOGY

High-Resolution Lipidomics of the Early Life Stages of the Red Seaweed Porphyra dioica

(2018) Elisabete da Costa et al.   MOLECULES

MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis

(2018) Jasmine Chong et al.   NUCLEIC ACIDS RESEARCH

Elevated temperature drives kelp microbiome dysbiosis, while elevated carbon dioxide induces water microbiome disruption

(2018) Jeremiah J. Minich et al.   PLoS One

Acidification increases abundances of Vibrionales and Planctomycetia associated to a seaweed-grazer system: potential consequences for disease and prey digestion efficiency

(2018) Tania Aires et al.   PeerJ

Coastal urbanisation affects microbial communities on a dominant marine holobiont

(2018) Ezequiel M. Marzinelli et al.   npj Biofilms and Microbiomes

Role of Chemical Mediators in Aquatic Interactions across the Prokaryote–Eukaryote Boundary

(2018) Thomas Wichard et al.   JOURNAL OF CHEMICAL ECOLOGY

Alternate life history phases of a common seaweed have distinct microbial surface communities

(2018) Matthew A. Lemay et al.   MOLECULAR ECOLOGY

Summer shifts of bacterial communities associated with the invasive brown seaweed Sargassum muticum are location and tissue dependent

(2018) Alexandra Serebryakova et al.   PLoS One

Evolutionary Evidence of Algal Polysaccharide Degradation Acquisition by Pseudoalteromonas carrageenovora 9T to Adapt to Macroalgal Niches

(2018) Angélique Gobet et al.   Frontiers in Microbiology

Sympatric kelp species share a large portion of their surface bacterial communities

(2017) Matthew A. Lemay et al.   ENVIRONMENTAL MICROBIOLOGY

The major changes in lipid composition of Sargassum horneri during different growth phases

(2017) Peng Zhang et al.   JOURNAL OF APPLIED PHYCOLOGY

Simultaneous structural identification of diacylglyceryl-N-trimethylhomoserine (DGTS) and diacylglycerylhydroxymethyl-N,N,N-trimethyl-β-alanine (DGTA) in microalgae using dual Li+/H+ adduct ion mode by ultra-performance liquid chromatography/quadrupole ti

(2017) Yanrong Li et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Advantages of phylogenetic distance based constrained ordination analyses for the examination of microbial communities

(2017) V. Shankar et al.   Scientific Reports

Application of high-throughput sequencing (HTS) metabarcoding to diatom biomonitoring: Do DNA extraction methods matter?

(2017) Valentin Vasselon et al.   Freshwater Science

Application of high-throughput sequencing (HTS) metabarcoding to diatom biomonitoring: Do DNA extraction methods matter?

(2017) Valentin Vasselon et al.   Freshwater Science

eRah: A Computational Tool Integrating Spectral Deconvolution and Alignment with Quantification and Identification of Metabolites in GC/MS-Based Metabolomics

(2016) Xavier Domingo-Almenara et al.   ANALYTICAL CHEMISTRY

Surface metabolites of the brown algaTaonia atomariahave the ability to regulate epibiosis

(2016) Ahlem Othmani et al.   BIOFOULING

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

(2016) Mingxun Wang et al.   NATURE BIOTECHNOLOGY

Biofilms: an emergent form of bacterial life

(2016) Hans-Curt Flemming et al.   NATURE REVIEWS MICROBIOLOGY

Effects of Temperature Stress and Aquarium Conditions on the Red Macroalga Delisea pulchra and its Associated Microbial Community

(2016) Enrique Zozaya-Valdés et al.   Frontiers in Microbiology

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Isolation and characterization of a novel marine Bacteroidetes as Algitalea ulvae gen. nov., sp. nov., isolated from the green alga Ulva pertusa

(2015) Jaewoo Yoon et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Continental-scale variation in seaweed host-associated bacterial communities is a function of host condition, not geography

(2015) Ezequiel M. Marzinelli et al.   ENVIRONMENTAL MICROBIOLOGY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Crustose coralline algal species host distinct bacterial assemblages on their surfaces

(2015) Jennifer M Sneed et al.   ISME Journal

Settlement inhibition of marine biofilm bacteria and barnacle larvae by compounds isolated from the Mediterranean brown alga Taonia atomaria

(2015) Ahlem Othmani et al.   JOURNAL OF APPLIED PHYCOLOGY

Microbial Surface Colonization and Biofilm Development in Marine Environments

(2015) Hongyue Dang et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The green seaweed Ulva: a model system to study morphogenesis

(2015) Thomas Wichard et al.   Frontiers in Plant Science

Workflow4Metabolomics: a collaborative research infrastructure for computational metabolomics

(2014) F. Giacomoni et al.   BIOINFORMATICS

Salinity affects compositional traits of epibacterial communities on the brown macroalgaFucus vesiculosus

(2014) Stephanie B. Stratil et al.   FEMS MICROBIOLOGY ECOLOGY

Defence Chemistry Modulation by Light and Temperature Shifts and the Resulting Effects on Associated Epibacteria of Fucus vesiculosus

(2014) Mahasweta Saha et al.   PLoS One

Swarm: robust and fast clustering method for amplicon-based studies

(2014) Frédéric Mahé et al.   PeerJ

Compounds associated with algal surfaces mediate epiphytic colonization of the marine macroalgaFucus vesiculosus

(2013) Tim Lachnit et al.   FEMS MICROBIOLOGY ECOLOGY

Enhancing Air Retention by BiomimickingSalvinia molestaStructures

(2013) Cho-Yun Yang et al.   JAPANESE JOURNAL OF APPLIED PHYSICS

Volatile Organic Compound Mediated Interactions at the Plant-Microbe Interface

(2013) Robert R. Junker et al.   JOURNAL OF CHEMICAL ECOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Temperature-driven shifts in the epibiotic bacterial community composition of the brown macroalgaFucus vesiculosus

(2013) Stephanie B Stratil et al.   MicrobiologyOpen

Dimethylsulphopropionate (DMSP) and proline from the surface of the brown alga Fucus vesiculosus inhibit bacterial attachment

(2012) M. Saha et al.   BIOFOULING

What we can learn from sushi: a review on seaweed-bacterial associations

(2012) Joke Hollants et al.   FEMS MICROBIOLOGY ECOLOGY

The Second Skin: Ecological Role of Epibiotic Biofilms on Marine Organisms

(2012) Martin Wahl et al.   Frontiers in Microbiology

Surface-associated fucoxanthin mediates settlement of bacterial epiphytes on the rockweedFucus vesiculosus

(2011) M. Saha et al.   BIOFOULING

Climate change and disease: bleaching of a chemically defended seaweed

(2011) ALEXANDRA H. CAMPBELL et al.   GLOBAL CHANGE BIOLOGY

Catabolism of dimethylsulphoniopropionate: microorganisms, enzymes and genes

(2011) Andrew R. J. Curson et al.   NATURE REVIEWS MICROBIOLOGY

Planctomycetes dominate biofilms on surfaces of the kelp Laminaria hyperborea

(2010) Mia M Bengtsson et al.   BMC MICROBIOLOGY

Temperature induced bacterial virulence and bleaching disease in a chemically defended marine macroalga

(2010) Rebecca J. Case et al.   ENVIRONMENTAL MICROBIOLOGY

Spatial and temporal variation in DMSP content in the invasive seaweed Codium fragile ssp. fragile: effects of temperature, light and grazing

(2010) DA Lyons et al.   MARINE ECOLOGY PROGRESS SERIES

Betaine lipids in chlorarachniophytes

(2010) Shannon A. Roche et al.   PHYCOLOGICAL RESEARCH

The red alga Bonnemaisonia asparagoides regulates epiphytic bacterial abundance and community composition by chemical defence

(2009) Göran M. Nylund et al.   FEMS MICROBIOLOGY ECOLOGY