Proximity-dependent biotin labelling reveals CP190 as an EcR/Usp molecular partner

Coolpup.py: versatile pile-up analysis of Hi-C data

(2020) Ilya M Flyamer et al.   BIOINFORMATICS

Chromatin targeting of nuclear pore proteins induces chromatin decondensation

(2019) Terra M. Kuhn et al.   JOURNAL OF CELL BIOLOGY

The Drosophila nuclear receptors EcR and ERR jointly regulate the expression of genes involved in carbohydrate metabolism

(2019) Elena V. Kovalenko et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Ecdysone-Induced 3D Chromatin Reorganization Involves Active Enhancers Bound by Pipsqueak and Polycomb

(2019) Irene Gutierrez-Perez et al.   Cell Reports

One signal stimulates different transcriptional activation mechanisms

(2018) Marina Yu. Mazina et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Discovery of proteins associated with a predefined genomic locus via dCas9–APEX-mediated proximity labeling

(2018) Samuel A. Myers et al.   NATURE METHODS

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update

(2018) Enis Afgan et al.   NUCLEIC ACIDS RESEARCH

Role of Su(Hw) zinc finger 10 and interaction with CP190 and Mod(mdg4) proteins in recruiting the Su(Hw) complex to chromatin sites in Drosophila

(2018) Larisa Melnikova et al.   PLoS One

Sub-kb Hi-C in D. melanogaster reveals conserved characteristics of TADs between insect and mammalian cells

(2018) Qi Wang et al.   Nature Communications

Efficient proximity labeling in living cells and organisms with TurboID

(2018) Tess C Branon et al.   NATURE BIOTECHNOLOGY

Hormone-dependent control of developmental timing through regulation of chromatin accessibility

(2017) Christopher M. Uyehara et al.   GENES & DEVELOPMENT

Metazoan Nuclear Pores Provide a Scaffold for Poised Genes and Mediate Induced Enhancer-Promoter Contacts

(2017) Pau Pascual-Garcia et al.   MOLECULAR CELL

EcR recruits dMi-2 and increases efficiency of dMi-2-mediated remodelling to constrain transcription of hormone-regulated genes

(2017) Judith Kreher et al.   Nature Communications

Proximity-dependent labeling methods for proteomic profiling in living cells

(2017) Chiao-Lin Chen et al.   Wiley Interdisciplinary Reviews-Developmental Biology

An improved smaller biotin ligase for BioID proximity labeling

(2016) Dae In Kim et al.   MOLECULAR BIOLOGY OF THE CELL

deepTools2: a next generation web server for deep-sequencing data analysis

(2016) Fidel Ramírez et al.   NUCLEIC ACIDS RESEARCH

Different enhancer classes in Drosophila bind distinct architectural proteins and mediate unique chromatin interactions and 3D architecture

(2016) Caelin Cubeñas-Potts et al.   NUCLEIC ACIDS RESEARCH

Determination of local chromatin composition by CasID

(2016) Elisabeth Schmidtmann et al.   Nucleus

Determination of local chromatin composition by CasID

(2016) Elisabeth Schmidtmann et al.   Nucleus

Early-late genes of the ecdysone cascade as models for transcriptional studies

(2015) Marina Yu Mazina et al.   CELL CYCLE

Distinct Roles of Chromatin Insulator Proteins in Control of the Drosophila Bithorax Complex

(2015) M. Savitsky et al.   GENETICS

Widespread Rearrangement of 3D Chromatin Organization Underlies Polycomb-Mediated Stress-Induced Silencing

(2015) Li Li et al.   MOLECULAR CELL

Proteomic mapping in liveDrosophilatissues using an engineered ascorbate peroxidase

(2015) Chiao-Lin Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CDK8-Cyclin C Mediates Nutritional Regulation of Developmental Transitions through the Ecdysone Receptor in Drosophila

(2015) Xiao-Jun Xie et al.   PLOS BIOLOGY

Two new insulator proteins, Pita and ZIPIC, target CP190 to chromatin

(2014) Oksana Maksimenko et al.   GENOME RESEARCH

Hormone-Responsive Enhancer-Activity Maps Reveal Predictive Motifs, Indirect Repression, and Targeting of Closed Chromatin

(2014) Daria Shlyueva et al.   MOLECULAR CELL

Directed evolution of APEX2 for electron microscopy and proximity labeling

(2014) Stephanie S Lam et al.   NATURE METHODS

Insulator protein Su(Hw) recruits SAGA and Brahma complexes and constitutes part of Origin Recognition Complex-binding sites in the Drosophila genome

(2013) Nadezhda E. Vorobyeva et al.   NUCLEIC ACIDS RESEARCH

Ecdysone Control of Developmental Transitions: Lessons from Drosophila Research

(2012) Naoki Yamanaka et al.   Annual Review of Entomology

Nature and function of insulator protein binding sites in the Drosophila genome

(2012) Y. B. Schwartz et al.   GENOME RESEARCH

SUMO conjugation is required for the assembly of Drosophila Su(Hw) and Mod(mdg4) into insulator bodies that facilitate insulator complex formation

(2012) A. Golovnin et al.   JOURNAL OF CELL SCIENCE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Identifying ChIP-seq enrichment using MACS

(2012) Jianxing Feng et al.   Nature Protocols

SAYP and Brahma are important for ‘repressive’ and ‘transient’ Pol II pausing

(2012) Nadezhda E. Vorobyeva et al.   NUCLEIC ACIDS RESEARCH

Ecdysone- and NO-Mediated Gene Regulation by Competing EcR/Usp and E75A Nuclear Receptors during Drosophila Development

(2011) Danika M. Johnston et al.   MOLECULAR CELL

Regulation of Chromatin Organization and Inducible Gene Expression by a Drosophila Insulator

(2011) Ashley M. Wood et al.   MOLECULAR CELL

Promiscuous protein biotinylation by Escherichia coli biotin protein ligase

(2004) Eunjoo Choi-Rhee et al.   PROTEIN SCIENCE