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Title
Review on natural products databases: where to find data in 2020
Authors
Keywords
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Journal
Journal of Cheminformatics
Volume 12, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-04-03
DOI
10.1186/s13321-020-00424-9
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- Computational Methodologies in the Exploration of Marine Natural Product Leads
- (2018) Florbela Pereira et al. Marine Drugs
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- IMPPAT: A curated database of Indian Medicinal Plants, Phytochemistry And Therapeutics
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- (2018) Hai-Yu Xu et al. NUCLEIC ACIDS RESEARCH
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- (2013) Jiangyong Gu et al. PLoS One
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- (2013) Sunil Sagar et al. Journal of Cheminformatics
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- Evolving Trends in the Dereplication of Natural Product Extracts: New Methodology for Rapid, Small-Scale Investigation of Natural Product Extracts
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