Analysis of genetic architecture and favorable allele usage of agronomic traits in a large collection of Chinese rice accessions

Updating the Genome of the Elite Rice Variety Kongyu131 to Expand Its Ecological Adaptation Region

(2019) Rongsheng Wang et al.   Frontiers in Plant Science

Genome-wide dissection of segregation distortion using multiple inter-subspecific crosses in rice

(2019) Guangwei Li et al.   Science China-Life Sciences

Improving the blast resistance of the elite rice variety Kongyu-131 by updating the pi21 locus

(2019) Xiaomin Feng et al.   BMC PLANT BIOLOGY

Ef-cd locus shortens rice maturity duration without yield penalty

(2019) Jun Fang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-Wide Association Studies of Image Traits Reveal Genetic Architecture of Drought Resistance in Rice

(2018) Zilong Guo et al.   Molecular Plant

Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice

(2018) Qiang Zhao et al.   NATURE GENETICS

Dissecting the genetic basis of heavy panicle hybrid rice uncovered Gn1a and GS3 as key genes

(2018) Shiguang Wang et al.   THEORETICAL AND APPLIED GENETICS

Improving rice grain length through updating the GS3 locus of an elite variety Kongyu 131

(2018) Jianzong Nan et al.   Rice

Genome-wide association studies reveal that members of bHLH subfamily 16 share a conserved function in regulating flag leaf angle in rice (Oryza sativa)

(2018) Haijiao Dong et al.   PLoS Genetics

Divergent Hd1, Ghd7, and DTH7 Alleles Control Heading Date and Yield Potential of Japonica Rice in Northeast China

(2018) Jing Ye et al.   Frontiers in Plant Science

Genomic variation in 3,010 diverse accessions of Asian cultivated rice

(2018) Wensheng Wang et al.   NATURE

Natural Variation in the Promoter of GSE5 Contributes to Grain Size Diversity in Rice

(2017) Penggen Duan et al.   Molecular Plant

Updating the elite rice variety Kongyu 131 by improving the Gn1a locus

(2017) Xiaomin Feng et al.   Rice

Sequencing and de novo assembly of a near complete indica rice genome

(2017) Huilong Du et al.   Nature Communications

The DENSE AND ERECT PANICLE 1 (DEP1) gene offering the potential in the breeding of high-yielding rice

(2016) Hai Xu et al.   BREEDING SCIENCE

Genomic architecture of heterosis for yield traits in rice

(2016) Xuehui Huang et al.   NATURE

Integrated analysis of phenome, genome, and transcriptome of hybrid rice uncovered multiple heterosis-related loci for yield increase

(2016) Dayong Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide association and high-resolution phenotyping link Oryza sativa panicle traits to numerous trait-specific QTL clusters

(2016) Samuel Crowell et al.   Nature Communications

Genetic Architecture of Natural Variation in Rice Chlorophyll Content Revealed by a Genome-Wide Association Study

(2015) Quanxiu Wang et al.   Molecular Plant

Combinations of theGhd7,Ghd8andHd1genes largely define the ecogeographical adaptation and yield potential of cultivated rice

(2015) Jia Zhang et al.   NEW PHYTOLOGIST

Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection

(2015) Weibo Xie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Artificial Selection of Gn1a Plays an Important role in Improving Rice Yields Across Different Ecological Regions

(2015) Jie Wang et al.   Rice

Genomic analysis of hybrid rice varieties reveals numerous superior alleles that contribute to heterosis

(2015) Xuehui Huang et al.   Nature Communications

Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism

(2014) Wei Chen et al.   NATURE GENETICS

Days to heading 7, a major quantitative locus determining photoperiod sensitivity and regional adaptation in rice

(2014) He Gao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Combining high-throughput phenotyping and genome-wide association studies to reveal natural genetic variation in rice

(2014) Wanneng Yang et al.   Nature Communications

Expression patterns of photoperiod and temperature regulated heading date genes in Oryza sativa

(2013) Mallikarjuna Rao Kovi et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

A map of rice genome variation reveals the origin of cultivated rice

(2012) Xuehui Huang et al.   NATURE

Interaction between temperature and photoperiod in regulation of flowering time in rice

(2012) YuanLi Song et al.   Science China-Life Sciences

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm

(2011) Xuehui Huang et al.   NATURE GENETICS

Surfactant-enabled epitaxy through control of growth mode with chemical boundary conditions

(2011) Elizabeth A. Paisley et al.   Nature Communications

Stability of QTL Across Environments and QTL-by-Environment Interactions for Plant and Ear Height in Maize

(2010) Yan ZHANG et al.   Agricultural Sciences in China

Genetic and Molecular Bases of Rice Yield

(2010) Yongzhong Xing et al.   Annual Review of Plant Biology

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Variance component model to account for sample structure in genome-wide association studies

(2010) Hyun Min Kang et al.   NATURE GENETICS

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

The expression of Orysa;CycB1;1 is essential for endosperm formation and causes embryo enlargement in rice

(2009) Jing Guo et al.   PLANTA

Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice

(2009) Y. Takahashi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice

(2008) Weiya Xue et al.   NATURE GENETICS