Dormancy dynamics and dispersal contribute to soil microbiome resilience

A census-based estimate of Earth's bacterial and archaeal diversity

(2019) Stilianos Louca et al.   PLOS BIOLOGY

16S rRNA/rRNA Gene Ratios and Cell Activity Staining Reveal Consistent Patterns of Microbial Activity in Plant-Associated Soil

(2019) Alan W. Bowsher et al.   mSystems

Scientists’ warning to humanity: microorganisms and climate change

(2019) Ricardo Cavicchioli et al.   NATURE REVIEWS MICROBIOLOGY

Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops

(2019) Keara L. Grady et al.   Nature Communications

Chesson's coexistence theory

(2018) György Barabás et al.   ECOLOGICAL MONOGRAPHS

Evolution with a seed bank: The population genetic consequences of microbial dormancy

(2018) William R. Shoemaker et al.   Evolutionary Applications

Trait-based patterns of microbial dynamics in dormancy potential and heterotrophic strategy: case studies of resource-based and post-press succession

(2018) Patrick J. Kearns et al.   ISME Journal

Ecological selection for small microbial genomes along a temperate-to-thermal soil gradient

(2018) Jackson W. Sorensen et al.   Nature Microbiology

Divergent extremes but convergent recovery of bacterial and archaeal soil communities to an ongoing subterranean coal mine fire

(2017) Sang-Hoon Lee et al.   ISME Journal

A communal catalogue reveals Earth’s multiscale microbial diversity

(2017) Luke R. Thompson et al.   NATURE

Species-sorting and mass-transfer paradigms control managed natural metacommunities

(2016) Susanne Günther et al.   ENVIRONMENTAL MICROBIOLOGY

Effects of dispersal and selection on stochastic assembly in microbial communities

(2016) Sarah Evans et al.   ISME Journal

Scaling laws predict global microbial diversity

(2016) Kenneth J. Locey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Relic DNA is abundant in soil and obscures estimates of soil microbial diversity

(2016) Paul Carini et al.   Nature Microbiology

Historical Contingency in Community Assembly: Integrating Niches, Species Pools, and Priority Effects

(2015) Tadashi Fukami   Annual Review of Ecology Evolution and Systematics

Error filtering, pair assembly and error correction for next-generation sequencing reads

(2015) Robert C. Edgar et al.   BIOINFORMATICS

Resilience vs. historical contingency in microbial responses to environmental change

(2015) Christine V. Hawkes et al.   ECOLOGY LETTERS

Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development

(2015) Adam R Burns et al.   ISME Journal

Decreases in average bacterial community rRNA operon copy number during succession

(2015) Diana R Nemergut et al.   ISME Journal

Microbial rRNA:rDNA gene ratios may be unexpectedly low due to extracellular DNA preservation in soils

(2015) Glade Dlott et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

(2015) Francisco Dini-Andreote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conditionally Rare Taxa Disproportionately Contribute to Temporal Changes in Microbial Diversity

(2014) A. Shade et al.   mBio

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses

(2013) Steven J Blazewicz et al.   ISME Journal

A meta-analysis of changes in bacterial and archaeal communities with time

(2013) Ashley Shade et al.   ISME Journal

Changes in assembly processes in soil bacterial communities following a wildfire disturbance

(2013) Scott Ferrenberg et al.   ISME Journal

Patterns and Processes of Microbial Community Assembly

(2013) D. R. Nemergut et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Active microorganisms in soil: Critical review of estimation criteria and approaches

(2013) Evgenia Blagodatskaya et al.   SOIL BIOLOGY & BIOCHEMISTRY

Stochastic Assembly Leads to Alternative Communities with Distinct Functions in a Bioreactor Microbial Community

(2013) J. Zhou et al.   mBio

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Fundamentals of Microbial Community Resistance and Resilience

(2012) Ashley Shade et al.   Frontiers in Microbiology

Mapping the coal fire at Centralia, Pa using thermal infrared imagery

(2011) Jennifer M. Elick   INTERNATIONAL JOURNAL OF COAL GEOLOGY

Temporal variation of β-diversity and assembly mechanisms in a bacterial metacommunity

(2011) Silke Langenheder et al.   ISME Journal

Microbial seed banks: the ecological and evolutionary implications of dormancy

(2011) Jay T. Lennon et al.   NATURE REVIEWS MICROBIOLOGY

Presence and potential role of thermophilic bacteria in temperate terrestrial environments

(2011) M. C. Portillo et al.   NATURWISSENSCHAFTEN

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Microorganisms and climate change: terrestrial feedbacks and mitigation options

(2010) Brajesh K. Singh et al.   NATURE REVIEWS MICROBIOLOGY

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dormancy contributes to the maintenance of microbial diversity

(2010) S. E. Jones et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coexistence in Disturbance‐Prone Communities: How a Resistance‐Resilience Trade‐Off Generates Coexistence via the Storage Effect

(2009) Adam D. Miller et al.   AMERICAN NATURALIST

A Constant Flux of Diverse Thermophilic Bacteria into the Cold Arctic Seabed

(2009) C. Hubert et al.   SCIENCE

Thermophilic bacteria in cool temperate soils: are they metabolically active or continually added by global atmospheric transport?

(2008) Roger Marchant et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA