Transposable elements employ distinct integration strategies with respect to transcriptional landscapes in eukaryotic genomes
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Transposable elements employ distinct integration strategies with respect to transcriptional landscapes in eukaryotic genomes
Authors
Keywords
-
Journal
NUCLEIC ACIDS RESEARCH
Volume -, Issue -, Pages -
Publisher
Oxford University Press (OUP)
Online
2020-04-30
DOI
10.1093/nar/gkaa370
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Massive Changes of Genome Size Driven by Expansions of Non-autonomous Transposable Elements
- (2019) Magali Naville et al. CURRENT BIOLOGY
- Genome-wide de novo L1 Retrotransposition Connects Endonuclease Activity with Replication
- (2019) Diane A. Flasch et al. CELL
- The Landscape of L1 Retrotransposons in the Human Genome Is Shaped by Pre-insertion Sequence Biases and Post-insertion Selection
- (2019) Tania Sultana et al. MOLECULAR CELL
- The unique epigenetic features of Pack-MULEs and their impact on chromosomal base composition and expression spectrum
- (2018) Dongyan Zhao et al. NUCLEIC ACIDS RESEARCH
- An Updated Gene Atlas for Maize Reveals Organ‐Specific and Stress‐Induced Genes
- (2018) Genevieve M Hoopes et al. PLANT JOURNAL
- Rice Expression Database (RED): An integrated RNA-Seq-derived gene expression database for rice
- (2017) Lin Xia et al. Journal of Genetics and Genomics
- Integration site selection by retroviruses and transposable elements in eukaryotes
- (2017) Tania Sultana et al. NATURE REVIEWS GENETICS
- agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update
- (2017) Tian Tian et al. NUCLEIC ACIDS RESEARCH
- FlyAtlas 2: a new version of the Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
- (2017) David P Leader et al. NUCLEIC ACIDS RESEARCH
- Profiling of Accessible Chromatin Regions across Multiple Plant Species and Cell Types Reveals Common Gene Regulatory Principles and New Control Modules
- (2017) Kelsey A. Maher et al. PLANT CELL
- Using bioinformatic and phylogenetic approaches to classify transposable elements and understand their complex evolutionary histories
- (2017) Irina R. Arkhipova Mobile DNA
- Ty1 Integrase Interacts with RNA Polymerase III-specific Subcomplexes to Promote Insertion of Ty1 Elements Upstream of Polymerase (Pol) III-transcribed Genes
- (2016) Stephanie Cheung et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Genome-wide Profiling Reveals Remarkable Parallels Between Insertion Site Selection Properties of the MLV Retrovirus and the piggyBac Transposon in Primary Human CD4+ T Cells
- (2016) Andreas Gogol-Döring et al. MOLECULAR THERAPY
- Regulatory activities of transposable elements: from conflicts to benefits
- (2016) Edward B. Chuong et al. NATURE REVIEWS GENETICS
- The First Rule of Plant Transposable Element Silencing: Location, Location, Location
- (2016) Meredith J. Sigman et al. PLANT CELL
- Open chromatin reveals the functional maize genome
- (2016) Eli Rodgers-Melnick et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Single-Nucleotide-Specific Targeting of the Tf1 Retrotransposon Promoted by the DNA-Binding Protein Sap1 of Schizosaccharomyces pombe
- (2015) A. Hickey et al. GENETICS
- RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome
- (2015) Qing Li et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- An RNA polymerase III subunit determines sites of retrotransposon integration
- (2015) A. Bridier-Nahmias et al. SCIENCE
- Suppression of endogenous gene silencing by bidirectional cytoplasmic RNA decay in Arabidopsis
- (2015) X. Zhang et al. SCIENCE
- Arrested replication forks guide retrotransposon integration
- (2015) J. Z. Jacobs et al. SCIENCE
- Chromatin Landscapes of Retroviral and Transposon Integration Profiles
- (2014) Johann de Jong et al. PLoS Genetics
- An Age-of-Allele Test of Neutrality for Transposable Element Insertions
- (2013) J. P. Blumenstiel et al. GENETICS
- Mu-seq: Sequence-Based Mapping and Identification of Transposon Induced Mutations
- (2013) Donald R. McCarty et al. PLoS One
- Active Transposition in Genomes
- (2012) Cheng Ran Lisa Huang et al. Annual Review of Genetics
- Centromere-targeted de novo integrations of an LTR retrotransposon of Arabidopsis lyrata
- (2012) S. Tsukahara et al. GENES & DEVELOPMENT
- Retrotransposon Ty1 integration targets specifically positioned asymmetric nucleosomal DNA segments in tRNA hotspots
- (2012) L. Mularoni et al. GENOME RESEARCH
- A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon
- (2012) J. A. Baller et al. GENOME RESEARCH
- How important are transposons for plant evolution?
- (2012) Damon Lisch NATURE REVIEWS GENETICS
- Defining the Status of RNA Polymerase at Promoters
- (2012) Leighton J. Core et al. Cell Reports
- TheDrosophilaGene Disruption Project: Progress Using Transposons With Distinctive Site Specificities
- (2011) Hugo J. Bellen et al. GENETICS
- Drosophila P elements preferentially transpose to replication origins
- (2011) A. C. Spradling et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Pack-Mutator-like transposable elements (Pack-MULEs) induce directional modification of genes through biased insertion and DNA acquisition
- (2011) N. Jiang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- DNA Transposons: Nature and Applications in Genomics
- (2010) Martin Munoz-Lopez et al. CURRENT GENOMICS
- Transposable elements in the mammalian germline: a comfortable niche or a deadly trap?
- (2010) N Zamudio et al. HEREDITY
- DNA transposon Hermes inserts into DNA in nucleosome-free regions in vivo
- (2010) S. Gangadharan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Drosophila HP1 Homolog Rhino Is Required for Transposon Silencing and piRNA Production by Dual-Strand Clusters
- (2009) Carla Klattenhoff et al. CELL
- Unexpected consequences of a sudden and massive transposon amplification on rice gene expression
- (2009) Ken Naito et al. NATURE
- Mu Transposon Insertion Sites and Meiotic Recombination Events Co-Localize with Epigenetic Marks for Open Chromatin across the Maize Genome
- (2009) Sanzhen Liu et al. PLoS Genetics
- The art and design of genetic screens: maize
- (2007) Héctor Candela et al. NATURE REVIEWS GENETICS
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started