Transposable elements employ distinct integration strategies with respect to transcriptional landscapes in eukaryotic genomes

Massive Changes of Genome Size Driven by Expansions of Non-autonomous Transposable Elements

(2019) Magali Naville et al.   CURRENT BIOLOGY

Genome-wide de novo L1 Retrotransposition Connects Endonuclease Activity with Replication

(2019) Diane A. Flasch et al.   CELL

The Landscape of L1 Retrotransposons in the Human Genome Is Shaped by Pre-insertion Sequence Biases and Post-insertion Selection

(2019) Tania Sultana et al.   MOLECULAR CELL

The unique epigenetic features of Pack-MULEs and their impact on chromosomal base composition and expression spectrum

(2018) Dongyan Zhao et al.   NUCLEIC ACIDS RESEARCH

An Updated Gene Atlas for Maize Reveals Organ‐Specific and Stress‐Induced Genes

(2018) Genevieve M Hoopes et al.   PLANT JOURNAL

Rice Expression Database (RED): An integrated RNA-Seq-derived gene expression database for rice

(2017) Lin Xia et al.   Journal of Genetics and Genomics

Integration site selection by retroviruses and transposable elements in eukaryotes

(2017) Tania Sultana et al.   NATURE REVIEWS GENETICS

agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update

(2017) Tian Tian et al.   NUCLEIC ACIDS RESEARCH

FlyAtlas 2: a new version of the Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

(2017) David P Leader et al.   NUCLEIC ACIDS RESEARCH

Profiling of Accessible Chromatin Regions across Multiple Plant Species and Cell Types Reveals Common Gene Regulatory Principles and New Control Modules

(2017) Kelsey A. Maher et al.   PLANT CELL

Using bioinformatic and phylogenetic approaches to classify transposable elements and understand their complex evolutionary histories

(2017) Irina R. Arkhipova   Mobile DNA

Ty1 Integrase Interacts with RNA Polymerase III-specific Subcomplexes to Promote Insertion of Ty1 Elements Upstream of Polymerase (Pol) III-transcribed Genes

(2016) Stephanie Cheung et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Genome-wide Profiling Reveals Remarkable Parallels Between Insertion Site Selection Properties of the MLV Retrovirus and the piggyBac Transposon in Primary Human CD4+ T Cells

(2016) Andreas Gogol-Döring et al.   MOLECULAR THERAPY

Regulatory activities of transposable elements: from conflicts to benefits

(2016) Edward B. Chuong et al.   NATURE REVIEWS GENETICS

The First Rule of Plant Transposable Element Silencing: Location, Location, Location

(2016) Meredith J. Sigman et al.   PLANT CELL

Open chromatin reveals the functional maize genome

(2016) Eli Rodgers-Melnick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-Nucleotide-Specific Targeting of the Tf1 Retrotransposon Promoted by the DNA-Binding Protein Sap1 of Schizosaccharomyces pombe

(2015) A. Hickey et al.   GENETICS

RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome

(2015) Qing Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An RNA polymerase III subunit determines sites of retrotransposon integration

(2015) A. Bridier-Nahmias et al.   SCIENCE

Suppression of endogenous gene silencing by bidirectional cytoplasmic RNA decay in Arabidopsis

(2015) X. Zhang et al.   SCIENCE

Arrested replication forks guide retrotransposon integration

(2015) J. Z. Jacobs et al.   SCIENCE

Chromatin Landscapes of Retroviral and Transposon Integration Profiles

(2014) Johann de Jong et al.   PLoS Genetics

An Age-of-Allele Test of Neutrality for Transposable Element Insertions

(2013) J. P. Blumenstiel et al.   GENETICS

Mu-seq: Sequence-Based Mapping and Identification of Transposon Induced Mutations

(2013) Donald R. McCarty et al.   PLoS One

Active Transposition in Genomes

(2012) Cheng Ran Lisa Huang et al.   Annual Review of Genetics

Centromere-targeted de novo integrations of an LTR retrotransposon of Arabidopsis lyrata

(2012) S. Tsukahara et al.   GENES & DEVELOPMENT

Retrotransposon Ty1 integration targets specifically positioned asymmetric nucleosomal DNA segments in tRNA hotspots

(2012) L. Mularoni et al.   GENOME RESEARCH

A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon

(2012) J. A. Baller et al.   GENOME RESEARCH

How important are transposons for plant evolution?

(2012) Damon Lisch   NATURE REVIEWS GENETICS

Defining the Status of RNA Polymerase at Promoters

(2012) Leighton J. Core et al.   Cell Reports

TheDrosophilaGene Disruption Project: Progress Using Transposons With Distinctive Site Specificities

(2011) Hugo J. Bellen et al.   GENETICS

Drosophila P elements preferentially transpose to replication origins

(2011) A. C. Spradling et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pack-Mutator-like transposable elements (Pack-MULEs) induce directional modification of genes through biased insertion and DNA acquisition

(2011) N. Jiang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA Transposons: Nature and Applications in Genomics

(2010) Martin Munoz-Lopez et al.   CURRENT GENOMICS

Transposable elements in the mammalian germline: a comfortable niche or a deadly trap?

(2010) N Zamudio et al.   HEREDITY

DNA transposon Hermes inserts into DNA in nucleosome-free regions in vivo

(2010) S. Gangadharan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Drosophila HP1 Homolog Rhino Is Required for Transposon Silencing and piRNA Production by Dual-Strand Clusters

(2009) Carla Klattenhoff et al.   CELL

Unexpected consequences of a sudden and massive transposon amplification on rice gene expression

(2009) Ken Naito et al.   NATURE

Mu Transposon Insertion Sites and Meiotic Recombination Events Co-Localize with Epigenetic Marks for Open Chromatin across the Maize Genome

(2009) Sanzhen Liu et al.   PLoS Genetics

The art and design of genetic screens: maize

(2007) Héctor Candela et al.   NATURE REVIEWS GENETICS