The Quest for Orthologs benchmark service and consensus calls in 2020
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Title
The Quest for Orthologs benchmark service and consensus calls in 2020
Authors
Keywords
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Journal
NUCLEIC ACIDS RESEARCH
Volume -, Issue -, Pages -
Publisher
Oxford University Press (OUP)
Online
2020-04-20
DOI
10.1093/nar/gkaa308
References
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Related references
Note: Only part of the references are listed.- Advances and Applications in the Quest for Orthologs
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- Alliance of Genome Resources Portal: unified model organism research platform
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- Domainoid: domain-oriented orthology inference
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- UniProt: a worldwide hub of protein knowledge
- (2018) NUCLEIC ACIDS RESEARCH
- eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
- (2018) Jaime Huerta-Cepas et al. NUCLEIC ACIDS RESEARCH
- MBGD update 2018: microbial genome database based on hierarchical orthology relations covering closely related and distantly related comparisons
- (2018) Ikuo Uchiyama et al. NUCLEIC ACIDS RESEARCH
- Nextflow enables reproducible computational workflows
- (2017) Paolo Di Tommaso et al. NATURE BIOTECHNOLOGY
- Systematic bacterialization of yeast genes identifies a near-universally swappable pathway
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- Standardized benchmarking in the quest for orthologs
- (2016) Adrian M Altenhoff et al. NATURE METHODS
- UniProt: the universal protein knowledgebase
- (2016) NUCLEIC ACIDS RESEARCH
- Ensembl comparative genomics resources
- (2016) Javier Herrero et al. Database-The Journal of Biological Databases and Curation
- The Orthology Ontology: development and applications
- (2016) Jesualdo Tomás Fernández-Breis et al. Journal of Biomedical Semantics
- The FAIR Guiding Principles for scientific data management and stewardship
- (2016) Mark D. Wilkinson et al. Scientific Data
- Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream
- (2015) Brigitte Boeckmann et al. Genome Biology and Evolution
- Systematic humanization of yeast genes reveals conserved functions and genetic modularity
- (2015) A. H. Kachroo et al. SCIENCE
- Big data and other challenges in the quest for orthologs
- (2014) E. L. L. Sonnhammer et al. BIOINFORMATICS
- Improvement of domain-level ortholog clustering by optimizing domain-specific sum-of-pairs score
- (2014) Hirokazu Chiba et al. BMC BIOINFORMATICS
- A Phylogeny-Based Benchmarking Test for Orthology Inference Reveals the Limitations of Function-Based Validation
- (2014) Kalliopi Trachana et al. PLoS One
- Bidirectional Best Hits Miss Many Orthologs in Duplication-Rich Clades such as Plants and Animals
- (2013) Daniel A. Dalquen et al. Genome Biology and Evolution
- Hieranoid: Hierarchical Orthology Inference
- (2013) Fabian Schreiber et al. JOURNAL OF MOLECULAR BIOLOGY
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Functional and evolutionary implications of gene orthology
- (2013) Toni Gabaldón et al. NATURE REVIEWS GENETICS
- Pfam: the protein families database
- (2013) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Toward community standards in the quest for orthologs
- (2012) C. Dessimoz et al. BIOINFORMATICS
- An integrative approach to ortholog prediction for disease-focused and other functional studies
- (2011) Yanhui Hu et al. BMC BIOINFORMATICS
- Letter to the Editor: SeqXML and OrthoXML: standards for sequence and orthology information
- (2011) T. Schmitt et al. BRIEFINGS IN BIOINFORMATICS
- Joining forces in the quest for orthologs
- (2009) Toni Gabaldón et al. GENOME BIOLOGY
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