Gene network transitions in embryos depend upon interactions between a pioneer transcription factor and core histones
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Title
Gene network transitions in embryos depend upon interactions between a pioneer transcription factor and core histones
Authors
Keywords
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Journal
NATURE GENETICS
Volume 52, Issue 4, Pages 418-427
Publisher
Springer Science and Business Media LLC
Online
2020-03-17
DOI
10.1038/s41588-020-0591-8
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Note: Only part of the references are listed.- Mammalian ISWI and SWI/SNF selectively mediate binding of distinct transcription factors
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- (2018) John L. Johnson et al. IMMUNITY
- Systematic Study of Nucleosome-Displacing Factors in Budding Yeast
- (2018) Chao Yan et al. MOLECULAR CELL
- Pioneers Invade the Nucleosomal Landscape
- (2018) Steven Henikoff et al. MOLECULAR CELL
- Pioneer factor Pax7 deploys a stable enhancer repertoire for specification of cell fate
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- (2018) Julie Donaghey et al. NATURE GENETICS
- BRG1 governs glucocorticoid receptor interactions with chromatin and pioneer factors across the genome
- (2018) Jackson A Hoffman et al. eLife
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- (2018) Gabriel J. Sandoval et al. MOLECULAR CELL
- The interaction landscape between transcription factors and the nucleosome
- (2018) Fangjie Zhu et al. NATURE
- Transcription Factors Drive Tet2-Mediated Enhancer Demethylation to Reprogram Cell Fate
- (2018) Jose Luis Sardina et al. Cell Stem Cell
- RSC-Associated Subnucleosomes Define MNase-Sensitive Promoters in Yeast
- (2018) Sandipan Brahma et al. MOLECULAR CELL
- KRAB zinc-finger proteins contribute to the evolution of gene regulatory networks
- (2017) Michaël Imbeault et al. NATURE
- Fox transcription factors: from development to disease
- (2016) Maria L. Golson et al. DEVELOPMENT
- Pioneering Activity of the C-Terminal Domain of EBF1 Shapes the Chromatin Landscape for B Cell Programming
- (2016) Sören Boller et al. IMMUNITY
- The Pioneer Transcription Factor FoxA Maintains an Accessible Nucleosome Configuration at Enhancers for Tissue-Specific Gene Activation
- (2016) Makiko Iwafuchi-Doi et al. MOLECULAR CELL
- Pioneer Transcription Factors Target Partial DNA Motifs on Nucleosomes to Initiate Reprogramming
- (2015) Abdenour Soufi et al. CELL
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- (2015) Rainelli B Koumangoye et al. Molecular Cancer
- Integrative analysis of 111 reference human epigenomes
- (2015) Anshul Kundaje et al. NATURE
- Absence of canonical marks of active chromatin in developmentally regulated genes
- (2015) Sílvia Pérez-Lluch et al. NATURE GENETICS
- Recruitment of RNA polymerase II by the pioneer transcription factor PHA-4
- (2015) H.- T. Hsu et al. SCIENCE
- C/EBPα Activates Pre-existing and De Novo Macrophage Enhancers during Induced Pre-B Cell Transdifferentiation and Myelopoiesis
- (2015) Chris van Oevelen et al. Stem Cell Reports
- Pioneer transcription factors in cell reprogramming
- (2014) Makiko Iwafuchi-Doi et al. GENES & DEVELOPMENT
- Coregulation of Transcription Factor Binding and Nucleosome Occupancy through DNA Features of Mammalian Enhancers
- (2014) Iros Barozzi et al. MOLECULAR CELL
- Comparative analysis of metazoan chromatin organization
- (2014) Joshua W. K. Ho et al. NATURE
- Full-length RNA-seq from single cells using Smart-seq2
- (2014) Simone Picelli et al. Nature Protocols
- Roles of cilia, fluid flow, and Ca2+ signaling in breaking of left–right symmetry
- (2013) Satoko Yoshiba et al. TRENDS IN GENETICS
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Mouse model reveals the role of SOX7 in the development of congenital diaphragmatic hernia associated with recurrent deletions of 8p23.1
- (2012) Margaret J. Wat et al. HUMAN MOLECULAR GENETICS
- Nucleosome-Driven Transcription Factor Binding and Gene Regulation
- (2012) Cecilia Ballaré et al. MOLECULAR CELL
- Controls of Nucleosome Positioning in the Human Genome
- (2012) Daniel J. Gaffney et al. PLoS Genetics
- The Msx1 Homeoprotein Recruits Polycomb to the Nuclear Periphery during Development
- (2011) Jingqiang Wang et al. DEVELOPMENTAL CELL
- Quantification of factors influencing fluorescent protein expression using RMCE to generate an allelic series in the ROSA26 locus in mice
- (2011) S. X. Chen et al. Disease Models & Mechanisms
- Mapping and analysis of chromatin state dynamics in nine human cell types
- (2011) Jason Ernst et al. NATURE
- The nucleosome map of the mammalian liver
- (2011) Zhaoyu Li et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Study of FoxA Pioneer Factor at Silent Genes Reveals Rfx-Repressed Enhancer at Cdx2 and a Potential Indicator of Esophageal Adenocarcinoma Development
- (2011) Jason A. Watts et al. PLoS Genetics
- p53 binds preferentially to genomic regions with high DNA-encoded nucleosome occupancy
- (2010) E. Lidor Nili et al. GENOME RESEARCH
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- (2010) Antoni Hurtado et al. NATURE GENETICS
- High Nucleosome Occupancy Is Encoded at Human Regulatory Sequences
- (2010) Desiree Tillo et al. PLoS One
- Nucleosome-binding affinity as a primary determinant of the nuclear mobility of the pioneer transcription factor FoxA
- (2009) T. Sekiya et al. GENES & DEVELOPMENT
- FoxA1 Translates Epigenetic Signatures into Enhancer-Driven Lineage-Specific Transcription
- (2008) Mathieu Lupien et al. CELL
- Krüppel-like factor 5 Is Essential for Blastocyst Development and the Normal Self-Renewal of Mouse ESCs
- (2008) Masatsugu Ema et al. Cell Stem Cell
- Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
- (2008) Da Wei Huang et al. NUCLEIC ACIDS RESEARCH
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