Population genomics through time provides insights into the consequences of decline and rapid demographic recovery through head-starting in a Galapagos giant tortoise

Genome-Wide Assessment of Diversity and Divergence Among Extant Galapagos Giant Tortoise Species

(2018) Joshua M Miller et al.   JOURNAL OF HEREDITY

Significant loss of mitochondrial diversity within the last century due to extinction of peripheral populations in eastern gorillas

(2018) Tom van der Valk et al.   Scientific Reports

Full Mitogenomes in the Critically Endangered Kākāpō Reveal Major Post-Glacial and Anthropogenic Effects on Neutral Genetic Diversity

(2018) Nicolas Dussex et al.   Genes

Substantial differences in bias between single-digest and double-digest RAD-seq libraries: A case study

(2017) Sarah P. Flanagan et al.   Molecular Ecology Resources

Finding the right coverage: the impact of coverage and sequence quality on single nucleotide polymorphism genotyping error rates

(2016) Emily D. Fountain et al.   Molecular Ecology Resources

Practical low-coverage genomewide sequencing of hundreds of individually barcoded samples for population and evolutionary genomics in nonmodel species

(2016) Nina Overgaard Therkildsen et al.   Molecular Ecology Resources

Genetics of a head-start program to guide conservation of an endangered Galápagos tortoise (Chelonoidis ephippium)

(2015) Evelyn L. Jensen et al.   CONSERVATION GENETICS

Evolutionary Genomics and Conservation of the Endangered Przewalski’s Horse

(2015) Clio Der Sarkissian et al.   CURRENT BIOLOGY

Comparing the performance of three ancient DNA extraction methods for high-throughput sequencing

(2015) Cristina Gamba et al.   Molecular Ecology Resources

Giant tortoises hatch on Galapagos island

(2015) Washington Tapia Aguilera et al.   NATURE

Museum samples reveal rapid evolution by wild honey bees exposed to a novel parasite

(2015) Alexander S. Mikheyev et al.   Nature Communications

Naturally rare versus newly rare: demographic inferences on two timescales inform conservation of Galápagos giant tortoises

(2015) Ryan C. Garrick et al.   Ecology and Evolution

Trade-offs and utility of alternative RADseq methods: Reply to Puritzet al.

(2014) Kimberly R. Andrews et al.   MOLECULAR ECOLOGY

Demystifying the RAD fad

(2014) Jonathan B. Puritz et al.   MOLECULAR ECOLOGY

related: an R package for analysing pairwise relatedness from codominant molecular markers

(2014) Jack Pew et al.   Molecular Ecology Resources

Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX

(2014) Mikkel Schubert et al.   Nature Protocols

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

(2013) Hákon Jónsson et al.   BIOINFORMATICS

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

NeEstimatorv2: re-implementation of software for the estimation of contemporary effective population size (Ne) from genetic data

(2013) C. Do et al.   Molecular Ecology Resources

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Reconstructing eight decades of genetic variation in an isolated Danish population of the large blue butterfly Maculinea arion

(2011) Line V Ugelvig et al.   BMC EVOLUTIONARY BIOLOGY

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

The role of infectious diseases in biological conservation

(2009) K. F. Smith et al.   ANIMAL CONSERVATION

Linkage disequilibrium estimates of contemporaryNeusing highly variable genetic markers: a largely untapped resource for applied conservation and evolution

(2009) Robin S. Waples et al.   Evolutionary Applications

Effective population size and patterns of molecular evolution and variation

(2009) Brian Charlesworth   NATURE REVIEWS GENETICS

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Environmental change and the option value of genetic diversity

(2008) Alistair S. Jump et al.   TRENDS IN PLANT SCIENCE

Adaptation from standing genetic variation

(2007) R BARRETT et al.   TRENDS IN ECOLOGY & EVOLUTION

Evaluating the effects of historic bottleneck events: an assessment of microsatellite variability in the endangered, North Atlantic right whale

(2003) R. C. Waldick et al.   MOLECULAR ECOLOGY

Microsatellite analysis of genetic divergence among populations of giant Galápagos tortoises

(2003) Claudio Ciofi et al.   MOLECULAR ECOLOGY