SAAMBE-3D: Predicting Effect of Mutations on Protein–Protein Interactions
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
SAAMBE-3D: Predicting Effect of Mutations on Protein–Protein Interactions
Authors
Keywords
-
Journal
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
Volume 21, Issue 7, Pages 2563
Publisher
MDPI AG
Online
2020-04-08
DOI
10.3390/ijms21072563
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Protein-Protein Interaction and Aggregation Inhibitors in Alzheimer's Disease
- (2019) Ankit Ganeshpurkar et al. CURRENT TOPICS IN MEDICINAL CHEMISTRY
- mCSM-PPI2: predicting the effects of mutations on protein–protein interactions
- (2019) Carlos H M Rodrigues et al. NUCLEIC ACIDS RESEARCH
- Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations
- (2019) Robert Fragoza et al. Nature Communications
- SKEMPI 2.0: An updated benchmark of changes in protein-protein binding energy, kinetics and thermodynamics upon mutation
- (2018) Justina Jankauskaitė et al. BIOINFORMATICS
- dbMPIKT: a database of kinetic and thermodynamic mutant protein interactions
- (2018) Quanya Liu et al. BMC BIOINFORMATICS
- iSEE: Interface structure, evolution, and energy-based machine learning predictor of binding affinity changes upon mutations
- (2018) Cunliang Geng et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- The Human Gene Mutation Database: towards a comprehensive repository of inherited mutation data for medical research, genetic diagnosis and next-generation sequencing studies
- (2017) Peter D. Stenson et al. HUMAN GENETICS
- BindProfX: Assessing Mutation-Induced Binding Affinity Change by Protein Interface Profiles with Pseudo-Counts
- (2017) Peng Xiong et al. JOURNAL OF MOLECULAR BIOLOGY
- Binding Analysis of Methyl-CpG Binding Domain of MeCP2 and Rett Syndrome Mutations
- (2016) Ye Yang et al. ACS Chemical Biology
- Protein–protein interactions of the LIM-only protein FHL2 and functional implication of the interactions relevant in cardiovascular disease
- (2016) M. Khang Tran et al. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH
- Variation Interpretation Predictors: Principles, Types, Performance, and Choice
- (2016) Abhishek Niroula et al. HUMAN MUTATION
- SAAMBE: Webserver to Predict the Charge of Binding Free Energy Caused by Amino Acids Mutations
- (2016) Marharyta Petukh et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Analysis of protein-coding genetic variation in 60,706 humans
- (2016) Monkol Lek et al. NATURE
- MutaBind estimates and interprets the effects of sequence variants on protein–protein interactions
- (2016) Minghui Li et al. NUCLEIC ACIDS RESEARCH
- Exploring the interplay between experimental methods and the performance of predictors of binding affinity change upon mutations in protein complexes
- (2016) Cunliang Geng et al. PROTEIN ENGINEERING DESIGN & SELECTION
- Investigating the linkage between disease-causing amino acid variants and their effect on protein stability and binding
- (2016) Yunhui Peng et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Impact of Rett Syndrome Mutations on MeCP2 MBD Stability
- (2015) Tugba G. Kucukkal et al. BIOCHEMISTRY
- Structural and physico-chemical effects of disease and non-disease nsSNPs on proteins
- (2015) Tugba G Kucukkal et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- On Human Disease-Causing Amino Acid Variants: Statistical Study of Sequence and Structural Patterns
- (2015) Marharyta Petukh et al. HUMAN MUTATION
- AB-Bind: Antibody binding mutational database for computational affinity predictions
- (2015) Sarah Sirin et al. PROTEIN SCIENCE
- Predicting Binding Free Energy Change Caused by Point Mutations with Knowledge-Modified MM/PBSA Method
- (2015) Marharyta Petukh et al. PLoS Computational Biology
- Predicting the Effect of Mutations on Protein-Protein Binding Interactions through Structure-Based Interface Profiles
- (2015) Jeffrey R. Brender et al. PLoS Computational Biology
- Predicting the Impact of Missense Mutations on Protein–Protein Binding Affinity
- (2014) Minghui Li et al. Journal of Chemical Theory and Computation
- Bioluminescent sensor proteins for point-of-care therapeutic drug monitoring
- (2014) Rudolf Griss et al. Nature Chemical Biology
- A protein engineered to bind uranyl selectively and with femtomolar affinity
- (2014) Lu Zhou et al. Nature Chemistry
- Proper reporting of predictor performance
- (2014) Mauno Vihinen NATURE METHODS
- Rational Design of Small-Molecule Stabilizers of Spermine Synthase Dimer by Virtual Screening and Free Energy-Based Approach
- (2014) Zhe Zhang et al. PLoS One
- A Massively Parallel Pipeline to Clone DNA Variants and Examine Molecular Phenotypes of Human Disease Mutations
- (2014) Xiaomu Wei et al. PLoS Genetics
- mCSM: predicting the effects of mutations in proteins using graph-based signatures
- (2013) Douglas E. V. Pires et al. BIOINFORMATICS
- The Role of Protonation States in Ligand-Receptor Recognition and Binding
- (2013) Marharyta Petukh et al. CURRENT PHARMACEUTICAL DESIGN
- Intermolecular Contact Potentials for Protein–Protein Interactions Extracted from Binding Free Energy Changes upon Mutation
- (2013) Iain H. Moal et al. Journal of Chemical Theory and Computation
- Molecular Mechanisms of Disease-Causing Missense Mutations
- (2013) Shannon Stefl et al. JOURNAL OF MOLECULAR BIOLOGY
- A rational free energy-based approach to understanding and targeting disease-causing missense mutations
- (2013) Zhe Zhang et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
- BeAtMuSiC: prediction of changes in protein–protein binding affinity on mutations
- (2013) Yves Dehouck et al. NUCLEIC ACIDS RESEARCH
- Cancer Missense Mutations Alter Binding Properties of Proteins and Their Interaction Networks
- (2013) Hafumi Nishi et al. PLoS One
- Protonation and pK changes in protein–ligand binding
- (2013) Alexey V. Onufriev et al. QUARTERLY REVIEWS OF BIOPHYSICS
- Zinc Drives a Tertiary Fold in the Prion Protein with Familial Disease Mutation Sites at the Interface
- (2013) Ann R. Spevacek et al. STRUCTURE
- SKEMPI: a Structural Kinetic and Energetic database of Mutant Protein Interactions and its use in empirical models
- (2012) Iain H. Moal et al. BIOINFORMATICS
- Chip-based protein-protein interaction studied by atomic force microscopy
- (2012) Feng-Sheng Kao et al. BIOTECHNOLOGY AND BIOENGINEERING
- How to evaluate performance of prediction methods? Measures and their interpretation in variation effect analysis
- (2012) Mauno Vihinen BMC GENOMICS
- History of protein-protein interactions: From egg-white to complex networks
- (2012) Pascal Braun et al. PROTEOMICS
- Disruptive TP53 Mutation Is Associated with Aggressive Disease Characteristics in an Orthotopic Murine Model of Oral Tongue Cancer
- (2011) D. Sano et al. CLINICAL CANCER RESEARCH
- Side-chain hydrophobicity scale derived from transmembrane protein folding into lipid bilayers
- (2011) C. P. Moon et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Smoothed Backbone-Dependent Rotamer Library for Proteins Derived from Adaptive Kernel Density Estimates and Regressions
- (2011) Maxim V. Shapovalov et al. STRUCTURE
- COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer
- (2010) S. A. Forbes et al. NUCLEIC ACIDS RESEARCH
- Predicting free energy changes using structural ensembles
- (2008) Alexander Benedix et al. NATURE METHODS
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started