Comparative Mitogenome Analysis of the Genus Trifolium Reveals Independent Gene Fission of ccmFn and Intracellular Gene Transfers in Fabaceae

The complete chloroplast genome sequence of Dumortiera hirsuta (Sw.) Nees (Marchantiophyta, Dumortieraceae)

(2019) Woochan Kwon et al.   Mitochondrial DNA Part B-Resources

Lost and Found: Return of the Inverted Repeat in the Legume Clade Defined by Its Absence

(2019) In-Su Choi et al.   Genome Biology and Evolution

Breaking Free: the Genomics of Allopolyploidy-facilitated Niche Expansion in White Clover

(2019) Andrew G Griffiths et al.   PLANT CELL

Potential of Transcript Editing Across Mitogenomes of Early Land Plants Shows Novel and Familiar Trends

(2019) Kamil Myszczyński et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genome of the tropical plant Marchantia inflexa: implications for sex chromosome evolution and dehydration tolerance

(2019) Rose A. Marks et al.   Scientific Reports

Fluctuations in Fabaceae mitochondrial genome size and content are both ancient and recent

(2019) In-Su Choi et al.   BMC PLANT BIOLOGY

Repeats of Unusual Size in Plant Mitochondrial Genomes: Identification, Incidence and Evolution

(2018) Emily L. Wynn et al.   G3-Genes Genomes Genetics

The little brown bat nuclear genome contains an entire mitochondrial genome: Real or artifact?

(2017) Huizhen Shi et al.   GENE

GeSeq – versatile and accurate annotation of organelle genomes

(2017) Michael Tillich et al.   NUCLEIC ACIDS RESEARCH

A new subfamily classification of the Leguminosae based on a taxonomically comprehensive phylogeny – The Legume Phylogeny Working Group (LPWG)

(2017) Nasim Azani et al.   TAXON

Intercompartmental Piecewise Gene Transfer

(2017) Przemyslaw Szafranski   Genes

Completion of the mitochondrial genome sequence of onion (Allium cepa L.) containing the CMS-S male-sterile cytoplasm and identification of an independent event of the ccmF N gene split

(2016) Bongju Kim et al.   CURRENT GENETICS

Coevolution between Nuclear-Encoded DNA Replication, Recombination, and Repair Genes and Plastid Genome Complexity

(2016) Jin Zhang et al.   Genome Biology and Evolution

GinkgoandWelwitschiaMitogenomes Reveal Extreme Contrasts in Gymnosperm Mitochondrial Evolution

(2016) Wenhu Guo et al.   MOLECULAR BIOLOGY AND EVOLUTION

tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes

(2016) Todd M. Lowe et al.   NUCLEIC ACIDS RESEARCH

The complete mitochondrial genome of Medicago truncatula

(2016) Changwei Bi et al.   Mitochondrial DNA Part B-Resources

Draft genome sequence of subterranean clover, a reference for genus Trifolium

(2016) Hideki Hirakawa et al.   Scientific Reports

Resolution of Brassicaceae Phylogeny Using Nuclear Genes Uncovers Nested Radiations and Supports Convergent Morphological Evolution

(2015) Chien-Hsun Huang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement

(2015) Jose J. De Vega et al.   Scientific Reports

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Evolutionary origin of highly repetitive plastid genomes within the clover genus (Trifolium)

(2014) Saemundur Sveinsson et al.   BMC EVOLUTIONARY BIOLOGY

Genes and Junk in Plant Mitochondria—Repair Mechanisms and Selection

(2014) Alan C. Christensen   Genome Biology and Evolution

Comparative analysis of 11 Brassicales mitochondrial genomes and the mitochondrial transcriptome of Brassica oleracea

(2014) Felix Grewe et al.   MITOCHONDRION

Evolutionary and biotechnology implications of plastid genome variation in the inverted-repeat-lacking clade of legumes

(2014) Jamal Sabir et al.   PLANT BIOTECHNOLOGY JOURNAL

Plant Mitochondrial Genome Evolution Can Be Explained by DNA Repair Mechanisms

(2013) Alan C. Christensen   Genome Biology and Evolution

Mitochondrial Genome Sequence of the Legume Vicia faba

(2013) Valentine Negruk   Frontiers in Plant Science

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Capturing the Biofuel Wellhead and Powerhouse: The Chloroplast and Mitochondrial Genomes of the Leguminous Feedstock Tree Pongamia pinnata

(2012) Stephen H. Kazakoff et al.   PLoS One

Circoletto: visualizing sequence similarity with Circos

(2010) N. Darzentas   BIOINFORMATICS

Localized hypermutation and associated gene losses in legume chloroplast genomes

(2010) A. M. Magee et al.   GENOME RESEARCH

PROSITE, a protein domain database for functional characterization and annotation

(2009) Christian J. A. Sigrist et al.   NUCLEIC ACIDS RESEARCH

The Three Mitochondrial Encoded CcmF Proteins Form a Complex That Interacts with CCMH andc-Type Apocytochromes inArabidopsis

(2008) Naganand Rayapuram et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Extensive Reorganization of the Plastid Genome of Trifolium subterraneum (Fabaceae) Is Associated with Numerous Repeated Sequences and Novel DNA Insertions

(2008) Zhengqiu Cai et al.   JOURNAL OF MOLECULAR EVOLUTION

Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants

(2008) G DROUIN et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Cytochrome c biogenesis in mitochondria

(2007) P. Giegé et al.   MITOCHONDRION