Rapid evolution of piRNA-mediated silencing of an invading transposable element was driven by abundant de novo mutations

Dynamics of Transposable Element Invasions with piRNA Clusters

(2019) Robert Kofler   MOLECULAR BIOLOGY AND EVOLUTION

Molecular dissection of a natural transposable element invasion

(2018) Robert Kofler et al.   GENOME RESEARCH

The Evolution of Small-RNA-Mediated Silencing of an Invading Transposable Element

(2018) Erin S Kelleher et al.   Genome Biology and Evolution

A Robust Transposon-Endogenizing Response from Germline Stem Cells

(2018) Sungjin Moon et al.   DEVELOPMENTAL CELL

Massive horizontal transfer of transposable elements in insects

(2017) Jean Peccoud et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Paternal Induction of Hybrid Dysgenesis in Drosophila melanogaster Is Weakly Correlated with Both P -Element and hobo Element Dosage

(2017) Satyam P. Srivastav et al.   G3-Genes Genomes Genetics

Targeted identification of TE insertions in a Drosophila genome through hemi-specific PCR

(2017) Shuo Zhang et al.   Mobile DNA

Reexamining the P -Element Invasion of Drosophila melanogaster Through the Lens of piRNA Silencing

(2016) Erin S. Kelleher   GENETICS

Hybrid Dysgenesis in Drosophila simulans Associated with a Rapid Invasion of the P-Element

(2016) Tom Hill et al.   PLoS Genetics

Reexamining the P -Element Invasion of Drosophila melanogaster Through the Lens of piRNA Silencing

(2016) Erin S. Kelleher   GENETICS

HTT-DB: Horizontally transferred transposable elements database: Fig. 1.

(2015) Bruno Reis Dotto et al.   BIOINFORMATICS

Paramutation in Drosophila Requires Both Nuclear and Cytoplasmic Actors of the piRNA Pathway and Induces Cis-spreading of piRNA Production

(2015) C. Hermant et al.   GENETICS

The Release 6 reference sequence of theDrosophila melanogastergenome

(2015) Roger A. Hoskins et al.   GENOME RESEARCH

Unique transposon landscapes are pervasive acrossDrosophila melanogastergenomes

(2015) Reazur Rahman et al.   NUCLEIC ACIDS RESEARCH

The recent invasion of naturalDrosophila simulanspopulations by the P-element

(2015) Robert Kofler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transgenerationally inherited piRNAs trigger piRNA biogenesis by changing the chromatin of piRNA clusters and inducing precursor processing

(2014) Adrien Le Thomas et al.   GENES & DEVELOPMENT

Variation in piRNA and Transposable Element Content in Strains of Drosophila melanogaster

(2014) Jimin Song et al.   Genome Biology and Evolution

Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines

(2014) W. Huang et al.   GENOME RESEARCH

TEMP: a computational method for analyzing transposable element polymorphism in populations

(2014) Jiali Zhuang et al.   NUCLEIC ACIDS RESEARCH

FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations

(2014) G. dos Santos et al.   NUCLEIC ACIDS RESEARCH

Euchromatic Transposon Insertions Trigger Production of Novel Pi- and Endo-siRNAs at the Target Sites in the Drosophila Germline

(2014) Sergey Shpiz et al.   PLoS Genetics

proTRAC - a software for probabilistic piRNA cluster detection, visualization and analysis

(2012) David Rosenkranz et al.   BMC BIOINFORMATICS

Long-Term and Short-Term Evolutionary Impacts of Transposable Elements on Drosophila

(2012) Yuh Chwen G. Lee et al.   GENETICS

Paramutation in Drosophila linked to emergence of a piRNA-producing locus

(2012) Augustin de Vanssay et al.   NATURE

The Drosophila melanogaster Genetic Reference Panel

(2012) Trudy F. C. Mackay et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Whole Genome Resequencing Reveals Natural Target Site Preferences of Transposable Elements in Drosophila melanogaster

(2012) Raquel S. Linheiro et al.   PLoS One

Sequencing of Pooled DNA Samples (Pool-Seq) Uncovers Complex Dynamics of Transposable Element Insertions in Drosophila melanogaster

(2012) Robert Kofler et al.   PLoS Genetics

The Many Landscapes of Recombination in Drosophila melanogaster

(2012) Josep M. Comeron et al.   PLoS Genetics

Adaptation to P Element Transposon Invasion in Drosophila melanogaster

(2011) Jaspreet S. Khurana et al.   CELL

Drosophila P elements preferentially transpose to replication origins

(2011) A. C. Spradling et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pervasive Horizontal Transfer of Rolling-Circle Transposons among Animals

(2010) Jainy Thomas et al.   Genome Biology and Evolution

Population Genomics of Transposable Elements in Drosophila melanogaster

(2010) D. A. Petrov et al.   MOLECULAR BIOLOGY AND EVOLUTION

Specialized piRNA Pathways Act in Germline and Somatic Tissues of the Drosophila Ovary

(2009) Colin D. Malone et al.   CELL

Collapse of Germline piRNAs in the Absence of Argonaute3 Reveals Somatic piRNAs in Flies

(2009) Chengjian Li et al.   CELL

Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila

(2009) J. Lu et al.   GENOME RESEARCH

Cytotype Regulation of P Transposable Elements in Drosophila melanogaster: Repressor Polypeptides or piRNAs?

(2008) P. A. Jensen et al.   GENETICS

The Effects of Recombination Rate on the Distribution and Abundance of Transposable Elements

(2008) E. S. Dolgin et al.   GENETICS

An Epigenetic Role for Maternally Inherited piRNAs in Transposon Silencing

(2008) J. Brennecke et al.   SCIENCE

Conserved themes in small-RNA-mediated transposon control

(2008) Angélique Girard et al.   TRENDS IN CELL BIOLOGY