Insights into the community structure and lifestyle of the fungal root endophytes of tomato by combining amplicon sequencing and isolation approaches with phytohormone profiling

Impact of Phosphorus Fertilization on Tomato Growth and Arbuscular Mycorrhizal Fungal Communities

(2020) Masao Higo et al.   Microorganisms

A preliminary examination of bacterial, archaeal, and fungal communities inhabiting different rhizocompartments of tomato plants under real-world environments

(2019) Shin Ae Lee et al.   Scientific Reports

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

(2018) Emmanuel Paradis et al.   BIOINFORMATICS

Specificity in Arabidopsis thaliana recruitment of root fungal communities from soil and rhizosphere

(2018) Hector Urbina et al.   Fungal Biology

Taxonomy and pathogenicity of Olpidium brassicae and its allied species

(2018) Chih-Ying Lay et al.   Fungal Biology

Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?

(2018) Joelle Sasse et al.   TRENDS IN PLANT SCIENCE

The beneficial root-colonizing fungus Mortierella hyalina promotes the aerial growth of Arabidopsis and activates calcium-dependent responses which restrict Alternaria brassicae-induced disease development in roots

(2018) Joy Michal Johnson et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival

(2018) Paloma Durán et al.   CELL

The Role of Host Genetic Signatures on Root–Microbe Interactions in the Rhizosphere and Endosphere

(2018) Peng Yu et al.   Frontiers in Plant Science

Cross Interaction Between Ilyonectria mors-panacis Isolates Infecting Korean Ginseng and Ginseng Saponins in Correlation with Their Pathogenicity

(2017) Mohamed El-Agamy Farh et al.   PHYTOPATHOLOGY

Characterization and pathogenicity assessment of Plectosphaerella species associated with stunting disease on tomato and pepper crops in Italy

(2017) M. L. Raimondo et al.   PLANT PATHOLOGY

The Effects of Cropping Regimes on Fungal and Bacterial Communities of Wheat and Faba Bean in a Greenhouse Pot Experiment Differ between Plant Species and Compartment

(2017) Sandra Granzow et al.   Frontiers in Microbiology

Effects of jasmonic acid signalling on the wheat microbiome differ between body sites

(2017) Hongwei Liu et al.   Scientific Reports

The microbiome of the leaf surface of Arabidopsis protects against a fungal pathogen

(2016) Unyarat Ritpitakphong et al.   NEW PHYTOLOGIST

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Natural variation of root exudates in Arabidopsis thaliana-linking metabolomic and genomic data

(2016) Susann Mönchgesang et al.   Scientific Reports

Management of tomato diseases caused by Fusarium oxysporum

(2015) R.J. McGovern   CROP PROTECTION

Role of plant growth regulators as chemical signals in plant–microbe interactions: a double edged sword

(2015) Carla Spence et al.   CURRENT OPINION IN PLANT BIOLOGY

The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes

(2015) Pablo R. Hardoim et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Linking Jasmonic Acid Signaling, Root Exudates, and Rhizosphere Microbiomes

(2015) Lilia C. Carvalhais et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Common foliar fungi ofPopulus trichocarpamodifyMelampsorarust disease severity

(2015) Posy E. Busby et al.   NEW PHYTOLOGIST

Fungal endophytes: modifiers of plant disease

(2015) Posy E. Busby et al.   PLANT MOLECULAR BIOLOGY

Diversity and biotransformative potential of endophytic fungi associated with the medicinal plant Kadsura angustifolia

(2015) Qian Huang et al.   RESEARCH IN MICROBIOLOGY

Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa

(2015) S. L. Lebeis et al.   SCIENCE

Plant biostimulants: Definition, concept, main categories and regulation

(2015) Patrick du Jardin   SCIENTIA HORTICULTURAE

Trichoderma as biostimulant: exploiting the multilevel properties of a plant beneficial fungus

(2015) José López-Bucio et al.   SCIENTIA HORTICULTURAE

Penicillium oxalicum directed systemic resistance in tomato against Alternaria alternata

(2014) Aqeel Ahmad et al.   ACTA PHYSIOLOGIAE PLANTARUM

Analysis of Plant-Bacteria Interactions in Their Native Habitat: Bacterial Communities Associated with Wild Tobacco Are Independent of Endogenous Jasmonic Acid Levels and Developmental Stages

(2014) Rakesh Santhanam et al.   PLoS One

Contrasting the Community Structure of Arbuscular Mycorrhizal Fungi from Hydrocarbon-Contaminated and Uncontaminated Soils following Willow (Salix spp. L.) Planting

(2014) Saad El-Din Hassan et al.   PLoS One

Genome-wide association study of Arabidopsis thaliana leaf microbial community

(2014) Matthew W. Horton et al.   Nature Communications

Control ofColletotrichum coccodeson Tomato by Grafting and Soil Amendments

(2013) Giovanna Gilardi et al.   JOURNAL OF PHYTOPATHOLOGY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Seed Rot, a New Disease of Beech Tree Caused by Neonectria ramulariae (anamorph: Cylindrocarpon obtusiusculum)

(2012) Yuuri Hirooka et al.   JOURNAL OF PHYTOPATHOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Induction of systemic resistance against Cucumber mosaic virus by Penicillium simplicissimum GP17-2 in Arabidopsis and tobacco

(2012) M. M. Elsharkawy et al.   PLANT PATHOLOGY

Ethylene Supports Colonization of Plant Roots by the Mutualistic Fungus Piriformospora indica

(2012) Behnam Khatabi et al.   PLoS One

High-Coverage ITS Primers for the DNA-Based Identification of Ascomycetes and Basidiomycetes in Environmental Samples

(2012) Hirokazu Toju et al.   PLoS One

Hormonal Modulation of Plant Immunity

(2011) Corné M.J. Pieterse et al.   Annual Review of Cell and Developmental Biology

Hidden Fungi, Emergent Properties: Endophytes and Microbiomes

(2011) Andrea Porras-Alfaro et al.   Annual Review of Phytopathology

Broad-Spectrum Suppression of Innate Immunity Is Required for Colonization of Arabidopsis Roots by the Fungus Piriformospora indica

(2011) S. Jacobs et al.   PLANT PHYSIOLOGY

Ameliorative symbiosis of endophyte (Penicillium funiculosum LHL06) under salt stress elevated plant growth of Glycine max L.

(2011) Abdul Latif Khan et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Effects of different concentrations of phosphorus on microbial communities in soybean rhizosphere grown in two types of soils

(2010) Junjie Liu et al.   ANNALS OF MICROBIOLOGY

Endophytic mycobiota of leaves and roots of the grass Holcus lanatus

(2010) S. Sánchez Márquez et al.   FUNGAL DIVERSITY

The arms race between tomato andFusarium oxysporum

(2010) FRANK TAKKEN et al.   MOLECULAR PLANT PATHOLOGY

In situ dynamics of soil fungal communities under different genotypes of potato, including a genetically modified cultivar

(2010) S.E. Hannula et al.   SOIL BIOLOGY & BIOCHEMISTRY

The structure of the culturable root bacterial endophyte community of Nicotiana attenuata is organized by soil composition and host plant ethylene production and perception

(2009) Hoang Hoa Long et al.   NEW PHYTOLOGIST

Linking development to defense: auxin in plant–pathogen interactions

(2009) Kemal Kazan et al.   TRENDS IN PLANT SCIENCE

Effect of soil amendments and biological control agents (BCAs) on soil-borne root diseases caused by Pyrenochaeta lycopersici and Verticillium albo-atrum in organic greenhouse tomato production systems

(2008) Charilaos Giotis et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Effectiveness of fumigants and grafting against tomato brown root rot caused byColletotrichum coccodes

(2008) Angelo Garibaldi et al.   PHYTOPARASITICA

Study on the diversity of endophytic communities from rice (Oryza sativa L.) and their antagonistic activities in vitro

(2007) B. Shankar Naik et al.   MICROBIOLOGICAL RESEARCH