Host identity is more important in structuring bacterial epiphytes than endophytes in a tropical mangrove forest

Driving factors of epiphytic bacterial communities: A review

(2019) Rudolf O. Schlechter et al.   Journal of Advanced Research

Plant host identity and soil macronutrients explain little variation in sapling endophyte community composition: Is disturbance an alternative explanation?

(2019) Eric A. Griffin et al.   JOURNAL OF ECOLOGY

Phyllosphere epiphytic and endophytic fungal community and network structures differ in a tropical mangrove ecosystem

(2019) Hui Yao et al.   Microbiome

Plant–microbe specificity varies as a function of elevation

(2019) Gerald M. Cobian et al.   ISME Journal

Endophytic and Epiphytic Phyllosphere Fungal Communities Are Shaped by Different Environmental Factors in a Mediterranean Ecosystem

(2018) Teresa Gomes et al.   MICROBIAL ECOLOGY

Urban Diets Linked to Gut Microbiome and Metabolome Alterations in Children: A Comparative Cross-Sectional Study in Thailand

(2018) Juma Kisuse et al.   Frontiers in Microbiology

Variation in the leaf and root microbiome of sugar maple (Acer saccharum) at an elevational range limit

(2018) Jessica Wallace et al.   PeerJ

Structural diversity across arbuscular mycorrhizal, ectomycorrhizal, and endophytic plant–fungus networks

(2018) Hirokazu Toju et al.   BMC PLANT BIOLOGY

Distribution and diversity of foliar endophytic fungi in the mangroves of Andaman Islands, India

(2018) T. Rajamani et al.   Fungal Ecology

Temporal shifts in endophyte bacterial community composition of sessile oak (Quercus petraea) are linked to foliar nitrogen, stomatal length, and herbivory

(2018) Luigimaria Borruso et al.   PeerJ

Phylogenetic relatedness explains highly interconnected and nested symbiotic networks of woody plants and arbuscular mycorrhizal fungi in a Chinese subtropical forest

(2017) Liang Chen et al.   MOLECULAR ECOLOGY

Leaf bacterial diversity mediates plant diversity and ecosystem function relationships

(2017) Isabelle Laforest-Lapointe et al.   NATURE

Host preference and network properties in biotrophic plant-fungal associations

(2017) Sergei Põlme et al.   NEW PHYTOLOGIST

The Phyllosphere: Microbial Jungle at the Plant–Climate Interface

(2016) Corinne Vacher et al.   Annual Review of Ecology Evolution and Systematics

Ericaceous plant-fungus network in a harsh alpine-subalpine environment

(2016) H. Toju et al.   MOLECULAR ECOLOGY

Evidence for foliar endophytic nitrogen fixation in a widely distributed subalpine conifer

(2016) Andrew B. Moyes et al.   NEW PHYTOLOGIST

The structure of legume–rhizobium interaction networks and their response to tree invasions

(2016) Johannes J. Le Roux et al.   AoB Plants

Host species identity, site and time drive temperate tree phyllosphere bacterial community structure

(2016) Isabelle Laforest-Lapointe et al.   Microbiome

Influences of Plant Species, Season and Location on Leaf Endophytic Bacterial Communities of Non-Cultivated Plants

(2016) Tao Ding et al.   PLoS One

The Ecology and Natural History of Foliar Bacteria with a Focus on Tropical Forests and Agroecosystems

(2015) Eric A. Griffin et al.   BOTANICAL REVIEW

Stability and succession of the rhizosphere microbiota depends upon plant type and soil composition

(2015) Andrzej Tkacz et al.   ISME Journal

Mycorrhizal networks and coexistence in species-rich orchid communities

(2015) Hans Jacquemyn et al.   NEW PHYTOLOGIST

Mycorrhizal ecology and evolution: the past, the present, and the future

(2015) Marcel G. A. van der Heijden et al.   NEW PHYTOLOGIST

Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species

(2015) Devin Coleman-Derr et al.   NEW PHYTOLOGIST

Interaction type influences ecological network structure more than local abiotic conditions: evidence from endophytic and endolichenic fungi at a continental scale

(2015) Pierre-Luc Chagnon et al.   OECOLOGIA

Below-ground plant-fungus network topology is not congruent with above-ground plant-animal network topology

(2015) H. Toju et al.   Science Advances

Plant traits and taxonomy drive host associations in tropical phyllosphere fungal communities

(2014) Steven W. Kembel et al.   Botany

Elevated rates of organic carbon, nitrogen, and phosphorus accumulation in a highly impacted mangrove wetland

(2014) Christian J. Sanders et al.   GEOPHYSICAL RESEARCH LETTERS

Diversity and abundance of phyllosphere bacteria are linked to insect herbivory

(2014) Parris T. Humphrey et al.   MOLECULAR ECOLOGY

Relationships between phyllosphere bacterial communities and plant functional traits in a neotropical forest

(2014) S. W. Kembel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The foliar microbiome

(2014) Josep Peñuelas et al.   TRENDS IN PLANT SCIENCE

Ecological Succession and Stochastic Variation in the Assembly of Arabidopsis thaliana Phyllosphere Communities

(2014) L. Maignien et al.   mBio

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Species diversity of culturable endophytic fungi from Brazilian mangrove forests

(2013) Fernanda Luiza de Souza Sebastianes et al.   CURRENT GENETICS

MODULAR: software for the autonomous computation of modularity in large network sets

(2013) Flavia Maria Darcie Marquitti et al.   ECOGRAPHY

Network perspectives of ectomycorrhizal associations

(2013) Mohammad Bahram et al.   Fungal Ecology

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Bacterial Communities Associated with the Leaves and the Roots of Arabidopsis thaliana

(2013) Natacha Bodenhausen et al.   PLoS One

The role of epiphytism in architecture and evolutionary constraint within mycorrhizal networks of tropical orchids

(2012) FLORENT MARTOS et al.   MOLECULAR ECOLOGY

Plant facilitation occurs between species differing in their associated arbuscular mycorrhizal fungi

(2012) A. Montesinos-Navarro et al.   NEW PHYTOLOGIST

Using ecological network theory to evaluate the causes and consequences of arbuscular mycorrhizal community structure

(2012) Pierre-Luc Chagnon et al.   NEW PHYTOLOGIST

Protection of Arabidopsis thaliana against Leaf-Pathogenic Pseudomonas syringae by Sphingomonas Strains in a Controlled Model System

(2011) Gerd Innerebner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Belowground biodiversity effects of plant symbionts support aboveground productivity

(2011) Cameron Wagg et al.   ECOLOGY LETTERS

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

(2011) Claudia Knief et al.   ISME Journal

Distinctive Phyllosphere Bacterial Communities in Tropical Trees

(2011) Mincheol Kim et al.   MICROBIAL ECOLOGY

Compartmentalization increases food-web persistence

(2011) Daniel B. Stouffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Why network analysis is often disconnected from community ecology: A critique and an ecologist's guide

(2010) Nico Blüthgen   BASIC AND APPLIED ECOLOGY

A straightforward computational approach for measuring nestedness using quantitative matrices

(2010) Mário Almeida-Neto et al.   ENVIRONMENTAL MODELLING & SOFTWARE

Status and distribution of mangrove forests of the world using earth observation satellite data

(2010) C. Giri et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Multitrophic interactions below and above ground: en route to the next level

(2010) Nicole M. van Dam et al.   JOURNAL OF ECOLOGY

Differentiation between true mangroves and mangrove associates based on leaf traits and salt contents

(2010) L. Wang et al.   Journal of Plant Ecology

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Recent progresses in mangrove conservation, restoration and research in China

(2009) L. Chen et al.   Journal of Plant Ecology

The architecture of mutualistic networks minimizes competition and increases biodiversity

(2009) Ugo Bastolla et al.   NATURE

Fungal endophytes: diversity and functional roles

(2009) R. J. Rodriguez et al.   NEW PHYTOLOGIST

Community proteogenomics reveals insights into the physiology of phyllosphere bacteria

(2009) N. Delmotte et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Role of Stomata in Plant Innate Immunity and Foliar Bacterial Diseases

(2008) Maeli Melotto et al.   Annual Review of Phytopathology

Nitrogen fixation by phyllosphere bacteria associated with higher plants and their colonizing epiphytes of a tropical lowland rainforest of Costa Rica

(2008) Michael Fürnkranz et al.   ISME Journal

A consumer's guide to nestedness analysis

(2008) Werner Ulrich et al.   OIKOS