Evidence for foliar endophytic nitrogen fixation in a widely distributed subalpine conifer

Robust biological nitrogen fixation in a model grass-bacterial association

(2015) Vânia C. S. Pankievicz et al.   PLANT JOURNAL

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reconstructing each cell's genome within complex microbial communities—dream or reality?

(2015) Scott Clingenpeel et al.   Frontiers in Microbiology

Bacterial endophyte communities in the foliage of coast redwood and giant sequoia

(2015) Alyssa A. Carrell et al.   Frontiers in Microbiology

Wild plant species growing closely connected in a subalpine meadow host distinct root-associated bacterial communities

(2015) Kristin Aleklett et al.   PeerJ

Dinitrogen fixation associated with shoots of aquatic carnivorous plants: is it ecologically important?

(2014) Dagmara Sirová et al.   ANNALS OF BOTANY

Chitinophaga costaii sp. nov., an endophyte of Pinus pinaster, and emended description of Chitinophaga niabensis

(2014) D. N. Proenca et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The Contamination of Commercial 15N2 Gas Stocks with 15N–Labeled Nitrate and Ammonium and Consequences for Nitrogen Fixation Measurements

(2014) Richard Dabundo et al.   PLoS One

Pinus flexilis and Piceae engelmannii share a simple and consistent needle endophyte microbiota with a potential role in nitrogen fixation

(2014) Alyssa A. Carrell et al.   Frontiers in Microbiology

Bacterial endophytes enhance competition by invasive plants

(2013) Marnie E. Rout et al.   AMERICAN JOURNAL OF BOTANY

Nitrogen mineralization assessment using PRS™ probes (ion-exchange membranes) and soil extractions in fertilized and unfertilized pine and spruce soils

(2013) D. J. Harrison et al.   CANADIAN JOURNAL OF SOIL SCIENCE

N2-Fixation and Seedling Growth Promotion of Lodgepole Pine by Endophytic Paenibacillus polymyxa

(2013) Richa Anand et al.   MICROBIAL ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

Biological nitrogen fixation and biomass accumulation within poplar clones as a result of inoculations with diazotrophic endophyte consortia

(2013) Jenny L. Knoth et al.   NEW PHYTOLOGIST

A nitrogen fertilization field study of carbon-13 and nitrogen-15 transfers in ectomycorrhizas of Pinus sabiniana

(2013) María Victoria Albarracín et al.   OECOLOGIA

Biological nitrogen fixation: rates, patterns and ecological controls in terrestrial ecosystems

(2013) P. M. Vitousek et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Bacterial Communities Associated with the Leaves and the Roots of Arabidopsis thaliana

(2013) Natacha Bodenhausen et al.   PLoS One

A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees

(2013) Migun Shakya et al.   PLoS One

Possible contribution of alternative nitrogenases to nitrogen fixation by asymbiotic N2-fixing bacteria in soils

(2013) J.P. Bellenger et al.   SOIL BIOLOGY & BIOCHEMISTRY

Insights into functional bacterial diversity and its effects on Alpine bog ecosystem functioning

(2013) Anastasia Bragina et al.   Scientific Reports

N2-fixation and growth promotion in cedar colonized by an endophytic strain of Paenibacillus polymyxa

(2012) Richa Anand et al.   BIOLOGY AND FERTILITY OF SOILS

Evidence of nitrogen fixation in lodgepole pine inoculated with diazotrophic Paenibacillus polymyxa

(2012) Amandeep Bal et al.   Botany

Short-Term N2 Fixation Kinetics in a Moss-Associated Cyanobacteria

(2012) Marie-Eve Jean et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Genome Sequence of Stenotrophomonas maltophilia RR-10, Isolated as an Endophyte from Rice Root

(2012) B. Zhu et al.   JOURNAL OF BACTERIOLOGY

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Dynamics of Seed-Borne Rice Endophytes on Early Plant Growth Stages

(2012) Pablo R. Hardoim et al.   PLoS One

Functional Ecology of Free-Living Nitrogen Fixation: A Contemporary Perspective

(2011) Sasha C. Reed et al.   Annual Review of Ecology Evolution and Systematics

Distinct Microbial Communities within the Endosphere and Rhizosphere of Populus deltoides Roots across Contrasting Soil Types

(2011) Neil R. Gottel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Living inside plants: bacterial endophytes

(2011) Barbara Reinhold-Hurek et al.   CURRENT OPINION IN PLANT BIOLOGY

Increased forest ecosystem carbon and nitrogen storage from nitrogen rich bedrock

(2011) Scott L. Morford et al.   NATURE

Carbon and nitrogen dynamics during forest stand development: a global synthesis

(2011) Yuanhe Yang et al.   NEW PHYTOLOGIST

Nitrogen fixation in legumes and actinorhizal plants in natural ecosystems: values obtained using15N natural abundance

(2011) Mitchell Andrews et al.   Plant Ecology & Diversity

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves

(2010) Amanda J. Redford et al.   ENVIRONMENTAL MICROBIOLOGY

Screening for endophytic nitrogen-fixing bacteria in Brazilian sugar cane varieties used in organic farming and description of Stenotrophomonas pavanii sp. nov.

(2010) P. L. Ramos et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Tackling the widespread and critical impact of batch effects in high-throughput data

(2010) Jeffrey T. Leek et al.   NATURE REVIEWS GENETICS

Facultative nitrogen fixation by canopy legumes in a lowland tropical forest

(2010) Alexander R. Barron et al.   OECOLOGIA

Diazotrophic endophytes of native black cottonwood and willow

(2010) Sharon L. Doty et al.   SYMBIOSIS

Facultative versus Obligate Nitrogen Fixation Strategies and Their Ecosystem Consequences

(2009) Duncan N. L. Menge et al.   AMERICAN NATURALIST

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Nitrogen fixation in different biogeochemical niches along a 120 000-year chronosequence in New Zealand

(2009) Duncan N. L. Menge et al.   ECOLOGY

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

The versatility and adaptation of bacteria from the genus Stenotrophomonas

(2009) Robert P. Ryan et al.   NATURE REVIEWS MICROBIOLOGY

Uptake of organic nitrogen by plants

(2009) Torgny Näsholm et al.   NEW PHYTOLOGIST

Real-time imaging of nitrogen fixation in an intact soybean plant with nodules using13N-labeled nitrogen gas

(2009) Satomi Ishii et al.   SOIL SCIENCE AND PLANT NUTRITION

Genome Survey and Characterization of Endophytic Bacteria Exhibiting a Beneficial Effect on Growth and Development of Poplar Trees

(2008) S. Taghavi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity of predominant endophytic bacteria in European deciduous and coniferous trees

(2008) Hironari Izumi et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Evolutionary tradeoffs can select against nitrogen fixation and thereby maintain nitrogen limitation

(2008) D. N. L. Menge et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In vitro and ex vivo storage phosphor imaging of short-living radioisotopes

(2007) Remco J.J. Knol et al.   JOURNAL OF NEUROSCIENCE METHODS