Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii
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Title
Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii
Authors
Keywords
Network modeling, Phenotypic transition, Transcriptional regulatory network, Metabolic network, Lipid accumulation, <em class=EmphasisTypeItalic >Chlamydomonas reinhardtii</em>
Journal
Biotechnology for Biofuels
Volume 8, Issue 1, Pages -
Publisher
Springer Nature
Online
2015-12-02
DOI
10.1186/s13068-015-0391-z
References
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Note: Only part of the references are listed.- Identification of AGO3-Associated miRNAs and Computational Prediction of Their Targets in the Green Alga Chlamydomonas reinhardtii
- (2015) A. Voshall et al. GENETICS
- Identification of regulatory network hubs that control lipid metabolism inChlamydomonas reinhardtii
- (2015) Mahmoud Gargouri et al. JOURNAL OF EXPERIMENTAL BOTANY
- Glycerol and neutral lipid production in the oleaginous marine diatom Phaeodactylum tricornutum promoted by overexpression of glycerol-3-phosphate dehydrogenase
- (2014) Yao Yao et al. Biotechnology for Biofuels
- System-level network analysis of nitrogen starvation and recovery in Chlamydomonas reinhardtii reveals potential new targets for increased lipid accumulation
- (2014) Luis Valledor et al. Biotechnology for Biofuels
- Lipid accumulation and biosynthesis genes response of the oleaginous Chlorella pyrenoidosa under three nutrition stressors
- (2014) Jianhua Fan et al. Biotechnology for Biofuels
- The Path to Triacylglyceride Obesity in the sta6 Strain of Chlamydomonas reinhardtii
- (2014) Ursula Goodenough et al. EUKARYOTIC CELL
- Successful Transient Expression of Cas9 and Single Guide RNA Genes in Chlamydomonas reinhardtii
- (2014) Wenzhi Jiang et al. EUKARYOTIC CELL
- The plant RWP-RK transcription factors: key regulators of nitrogen responses and of gametophyte development
- (2014) Camille Chardin et al. JOURNAL OF EXPERIMENTAL BOTANY
- Integrated Quantitative Analysis of Nitrogen Stress Response in Chlamydomonas reinhardtii Using Metabolite and Protein Profiling
- (2014) Nishikant Wase et al. JOURNAL OF PROTEOME RESEARCH
- A system-level model for the microbial regulatory genome
- (2014) A. N. Brooks et al. Molecular Systems Biology
- A high-resolution network model for global gene regulation in Mycobacterium tuberculosis
- (2014) Eliza J.R. Peterson et al. NUCLEIC ACIDS RESEARCH
- Gene Ontology Consortium: going forward
- (2014) NUCLEIC ACIDS RESEARCH
- Enhancement of extraplastidic oil synthesis inChlamydomonas reinhardtiiusing a type-2 diacylglycerol acyltransferase with a phosphorus starvation-inducible promoter
- (2014) Masako Iwai et al. PLANT BIOTECHNOLOGY JOURNAL
- Choreography of Transcriptomes and Lipidomes of Nannochloropsis Reveals the Mechanisms of Oil Synthesis in Microalgae
- (2014) J. Li et al. PLANT CELL
- Nitrogen-Sparing Mechanisms in Chlamydomonas Affect the Transcriptome, the Proteome, and Photosynthetic Metabolism
- (2014) S. Schmollinger et al. PLANT CELL
- Cytosolic Phosphorylating Glyceraldehyde-3-Phosphate Dehydrogenases AffectArabidopsisCellular Metabolism and Promote Seed Oil Accumulation
- (2014) Liang Guo et al. PLANT CELL
- Methylcrotonyl-CoA Carboxylase Regulates Triacylglycerol Accumulation in the Model Diatom Phaeodactylum tricornutum
- (2014) F. Ge et al. PLANT CELL
- The Regulation of Photosynthetic Structure and Function during Nitrogen Deprivation inChlamydomonas reinhardtii
- (2014) Matthew T. Juergens et al. PLANT PHYSIOLOGY
- Using Natural Selection to Explore the Adaptive Potential of Chlamydomonas reinhardtii
- (2014) Marie-Mathilde Perrineau et al. PLoS One
- Genome-wide identification of transcription factors and transcription-factor binding sites in oleaginous microalgae Nannochloropsis
- (2014) Jianqiang Hu et al. Scientific Reports
- Mechanosensitive physiology of chlamydomonas reinhardtii under direct membrane distortion
- (2014) Seul Ki Min et al. Scientific Reports
- Mapping and Dynamics of Regulatory DNA and Transcription Factor Networks in A. thaliana
- (2014) Alessandra M. Sullivan et al. Cell Reports
- Phosphorylation ofArabidopsistransketolase at Ser428provides a potential paradigm for the metabolic control of chloroplast carbon metabolism
- (2013) Agostinho G. Rocha et al. BIOCHEMICAL JOURNAL
- Bridging the gap between transcriptome and proteome measurements identifies post-translationally regulated genes
- (2013) Y. Gunawardana et al. BIOINFORMATICS
- Metabolic costs of amino acid and protein production inEscherichia coli
- (2013) Christoph Kaleta et al. Biotechnology Journal
- Advances in microalgae engineering and synthetic biology applications for biofuel production
- (2013) Javier A Gimpel et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- A systems level predictive model for global gene regulation of methanogenesis in a hydrogenotrophic methanogen
- (2013) Sung Ho Yoon et al. GENOME RESEARCH
- Transcriptome analysis of Chlamydomonas reinhardtii during the process of lipid accumulation
- (2013) Hexin Lv et al. GENOMICS
- Genome-scale modeling enables metabolic engineering of Saccharomyces cerevisiae for succinic acid production
- (2013) Rasmus Agren et al. JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
- Molecular mechanisms of system responses to novel stimuli are predictable from public data
- (2013) Samuel A. Danziger et al. NUCLEIC ACIDS RESEARCH
- Systems-Level Analysis of Nitrogen Starvation-Induced Modifications of Carbon Metabolism in a Chlamydomonas reinhardtii Starchless Mutant
- (2013) I. K. Blaby et al. PLANT CELL
- Transimulation - Protein Biosynthesis Web Service
- (2013) Marlena Siwiak et al. PLoS One
- Genome-Wide Identification of Regulatory Elements and Reconstruction of Gene Regulatory Networks of the Green Alga Chlamydomonas reinhardtii under Carbon Deprivation
- (2013) Flavia Vischi Winck et al. PLoS One
- Proteomic Analysis in Nitrogen-Deprived Isochrysis galbana during Lipid Accumulation
- (2013) Pingping Song et al. PLoS One
- Rapid Induction of Lipid Droplets in Chlamydomonas reinhardtii and Chlorella vulgaris by Brefeldin A
- (2013) Sangwoo Kim et al. PLoS One
- Metabolic engineering of lipid catabolism increases microalgal lipid accumulation without compromising growth
- (2013) E. M. Trentacoste et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Experimental evolution of an alternating uni- and multicellular life cycle in Chlamydomonas reinhardtii
- (2013) William C. Ratcliff et al. Nature Communications
- De Novo Sequencing and Global Transcriptome Analysis of Nannochloropsis sp. (Eustigmatophyceae) Following Nitrogen Starvation
- (2012) Chengwei Liang et al. BioEnergy Research
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
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- (2012) Turgay Cakmak et al. BIOTECHNOLOGY AND BIOENGINEERING
- Potential role of multiple carbon fixation pathways during lipid accumulation in Phaeodactylum tricornutum
- (2012) Jacob Valenzuela et al. Biotechnology for Biofuels
- Characterization and differential expression of microRNAs elicited by sulfur deprivation in Chlamydomonas reinhardtii
- (2012) Longfei Shu et al. BMC GENOMICS
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- (2012) Xiaobo Li et al. EUKARYOTIC CELL
- A miRNA-regulatory network explains how dysregulated miRNAs perturb oncogenic processes across diverse cancers
- (2012) C. L. Plaisier et al. GENOME RESEARCH
- Three Acyltransferases and Nitrogen-responsive Regulator Are Implicated in Nitrogen Starvation-induced Triacylglycerol Accumulation inChlamydomonas
- (2012) Nanette R. Boyle et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- System Response of Metabolic Networks inChlamydomonas reinhardtiito Total Available Ammonium
- (2012) Do Yup Lee et al. MOLECULAR & CELLULAR PROTEOMICS
- Wisdom of crowds for robust gene network inference
- (2012) Daniel Marbach et al. NATURE METHODS
- Metabolic and gene expression changes triggered by nitrogen deprivation in the photoautotrophically grown microalgae Chlamydomonas reinhardtii and Coccomyxa sp. C-169
- (2012) Joseph Msanne et al. PHYTOCHEMISTRY
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- (2012) S. Dal Santo et al. PLANT CELL
- A Galactoglycerolipid Lipase Is Required for Triacylglycerol Accumulation and Survival Following Nitrogen Deprivation in Chlamydomonas reinhardtii
- (2012) X. Li et al. PLANT CELL
- Oil accumulation in the model green alga Chlamydomonas reinhardtii: characterization, variability between common laboratory strains and relationship with starch reserves
- (2011) Magali Siaut et al. BMC BIOTECHNOLOGY
- Structural Correlates of Cytoplasmic and Chloroplast Lipid Body Synthesis in Chlamydomonas reinhardtii and Stimulation of Lipid Body Production with Acetate Boost
- (2011) Carrie Goodson et al. EUKARYOTIC CELL
- A chloroplast pathway for the de novo biosynthesis of triacylglycerol inChlamydomonas reinhardtii
- (2011) Jilian Fan et al. FEBS LETTERS
- Metabolic network reconstruction of Chlamydomonas offers insight into light-driven algal metabolism
- (2011) R. L. Chang et al. Molecular Systems Biology
- Phytozome: a comparative platform for green plant genomics
- (2011) David M. Goodstein et al. NUCLEIC ACIDS RESEARCH
- A revised mineral nutrient supplement increases biomass and growth rate in Chlamydomonas reinhardtii
- (2011) Janette Kropat et al. PLANT JOURNAL
- Comparative transcriptome and metabolite analysis of oil palm and date palm mesocarp that differ dramatically in carbon partitioning
- (2011) F. Bourgis et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Proteomic profiling of oil bodies isolated from the unicellular green microalga Chlamydomonas reinhardtii: With focus on proteins involved in lipid metabolism
- (2011) Hoa M. Nguyen et al. PROTEOMICS
- Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models
- (2010) Nathan E Lewis et al. Molecular Systems Biology
- What is flux balance analysis?
- (2010) Jeffrey D Orth et al. NATURE BIOTECHNOLOGY
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Dynamics of single mRNP nucleocytoplasmic transport and export through the nuclear pore in living cells
- (2010) Amir Mor et al. NATURE CELL BIOLOGY
- The Plastid Isoform of Triose Phosphate Isomerase Is Required for the Postgerminative Transition from Heterotrophic to Autotrophic Growth in Arabidopsis
- (2010) M. Chen et al. PLANT CELL
- RNA-Seq Analysis of Sulfur-DeprivedChlamydomonasCells Reveals Aspects of Acclimation Critical for Cell Survival
- (2010) David González-Ballester et al. PLANT CELL
- Changes in Transcript Abundance in Chlamydomonas reinhardtii following Nitrogen Deprivation Predict Diversion of Metabolism
- (2010) R. Miller et al. PLANT PHYSIOLOGY
- Probabilistic integrative modeling of genome-scale metabolic and regulatory networks inEscherichia coliandMycobacterium tuberculosis
- (2010) Sriram Chandrasekaran et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- An Outlook on Microalgal Biofuels
- (2010) R. H. Wijffels et al. SCIENCE
- A Comprehensive, Quantitative, and Genome-Wide Model of Translation
- (2010) Marlena Siwiak et al. PLoS Computational Biology
- Metabolic Engineering of Escherichia coli for Efficient Conversion of Glycerol to Ethanol
- (2009) C. T. Trinh et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Algal Lipid Bodies: Stress Induction, Purification, and Biochemical Characterization in Wild-Type and StarchlessChlamydomonas reinhardtii
- (2009) Zi Teng Wang et al. EUKARYOTIC CELL
- RNA Interference Silencing of a Major Lipid Droplet Protein Affects Lipid Droplet Size inChlamydomonas reinhardtii
- (2009) Eric R. Moellering et al. EUKARYOTIC CELL
- Correlation of mRNA and protein in complex biological samples
- (2009) Tobias Maier et al. FEBS LETTERS
- The Metabolome ofChlamydomonas reinhardtiifollowing Induction of Anaerobic H2Production by Sulfur Depletion
- (2009) Timmins Matthew et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- BioNumbers—the database of key numbers in molecular and cell biology
- (2009) Ron Milo et al. NUCLEIC ACIDS RESEARCH
- Knockdown of limiting-CO2-induced gene HLA3 decreases HCOFormula transport and photosynthetic Ci affinity in Chlamydomonas reinhardtii
- (2009) D. Duanmu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- STRING 8--a global view on proteins and their functional interactions in 630 organisms
- (2008) L. J. Jensen et al. NUCLEIC ACIDS RESEARCH
- Highly specific gene silencing by artificial microRNAs in the unicellular alga Chlamydomonas reinhardtii
- (2008) Attila Molnar et al. PLANT JOURNAL
- Tissue-Specific Expression Patterns of Arabidopsis NF-Y Transcription Factors Suggest Potential for Extensive Combinatorial Complexity
- (2008) N. Siefers et al. PLANT PHYSIOLOGY
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