A systems level predictive model for global gene regulation of methanogenesis in a hydrogenotrophic methanogen

Effects of H2 and Formate on Growth Yield and Regulation of Methanogenesis in Methanococcus maripaludis

(2013) K. C. Costa et al.   JOURNAL OF BACTERIOLOGY

H2-Independent Growth of the Hydrogenotrophic Methanogen Methanococcus maripaludis

(2013) K. C. Costa et al.   mBio

Metallochaperones Regulate Intracellular Copper Levels

(2013) W. Lee Pang et al.   PLoS Computational Biology

“Methanoplasmatales,” Thermoplasmatales-Related Archaea in Termite Guts and Other Environments, Are the Seventh Order of Methanogens

(2012) Kristina Paul et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A miRNA-regulatory network explains how dysregulated miRNAs perturb oncogenic processes across diverse cancers

(2012) C. L. Plaisier et al.   GENOME RESEARCH

The Wolfe cycle comes full circle

(2012) R. K. Thauer   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Essential anaplerotic role for the energy-converting hydrogenase Eha in hydrogenotrophic methanogenesis

(2012) T. J. Lie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Parallel evolution of transcriptome architecture during genome reorganization

(2011) S. H. Yoon et al.   GENOME RESEARCH

miRvestigator: web application to identify miRNAs responsible for co-regulated gene expression patterns discovered through transcriptome profiling

(2011) C. L. Plaisier et al.   NUCLEIC ACIDS RESEARCH

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Coupling of ferredoxin and heterodisulfide reduction via electron bifurcation in hydrogenotrophic methanogenic archaea

(2011) A.-K. Kaster et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

More Than 200 Genes Required for Methane Formation from H2and CO2and Energy Conservation Are Present inMethanothermobacter marburgensisandMethanothermobacter thermautotrophicus

(2011) Anne-Kristin Kaster et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Predictive network modeling of the high-resolution dynamic plant transcriptome in response to nitrate

(2011) Gabriel Krouk et al.   GENOME BIOLOGY

Characterization of Energy-Conserving Hydrogenase B in Methanococcus maripaludis

(2010) T. A. Major et al.   JOURNAL OF BACTERIOLOGY

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

(2010) D. Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Protein complexing in a methanogen suggests electron bifurcation and electron delivery from formate to heterodisulfide reductase

(2010) K. C. Costa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative proteomics of nutrient limitation in the hydrogenotrophic methanogen Methanococcus maripaludis

(2009) Qiangwei Xia et al.   BMC MICROBIOLOGY

Metabolic, Phylogenetic, and Ecological Diversity of the Methanogenic Archaea

(2008) Yuchen Liu et al.   Annals of the New York Academy of Sciences

Formate-Dependent H2 Production by the Mesophilic Methanogen Methanococcus maripaludis

(2008) B. Lupa et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Methanocella paludicola gen. nov., sp. nov., a methane-producing archaeon, the first isolate of the lineage 'Rice Cluster I', and proposal of the new archaeal order Methanocellales ord. nov.

(2008) S. Sakai et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Roles of Coenzyme F420-Reducing Hydrogenases and Hydrogen- and F420-Dependent Methylenetetrahydromethanopterin Dehydrogenases in Reduction of F420 and Production of Hydrogen during Methanogenesis

(2008) E. L. Hendrickson et al.   JOURNAL OF BACTERIOLOGY

Global Responses of Methanococcus maripaludis to Specific Nutrient Limitations and Growth Rate

(2008) E. L. Hendrickson et al.   JOURNAL OF BACTERIOLOGY

Methanogenic archaea: ecologically relevant differences in energy conservation

(2008) Rudolf K. Thauer et al.   NATURE REVIEWS MICROBIOLOGY

ArchaeaTF: An integrated database of putative transcription factors in Archaea

(2007) Jinyu Wu et al.   GENOMICS