High abundance of Ralstonia solanacearum changed tomato rhizosphere microbiome and metabolome

Insight into the Characteristics and New Mechanism of Nicosulfuron Biodegradation by a Pseudomonas sp. LAM1902

(2020) Miaomiao Li et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

ROOT‐ASSOCIATED MICROBES IN SUSTAINABLE AGRICULTURE: MODELS, METABOLITES AND MECHANISMS

(2019) Linda S. Thomashow et al.   PEST MANAGEMENT SCIENCE

Predominance of soil vs root effect in rhizosphere microbiota reassembly

(2019) Mengli Zhao et al.   FEMS MICROBIOLOGY ECOLOGY

Effect of phenolic acids from banana root exudates on root colonization and pathogen suppressive properties of Bacillus amyloliquefaciens NJN-6

(2018) Jun Yuan et al.   BIOLOGICAL CONTROL

Disease-induced assemblage of a plant-beneficial bacterial consortium

(2018) Roeland L. Berendsen et al.   ISME Journal

Involvement of Burkholderiaceae and sulfurous volatiles in disease-suppressive soils

(2018) Víctor J. Carrión et al.   ISME Journal

Breeding for soil-borne pathogen resistance impacts active rhizosphere microbiome of common bean

(2018) Lucas William Mendes et al.   ISME Journal

Ralstonia solanacearum pathogen disrupts bacterial rhizosphere microbiome during an invasion

(2018) Zhong Wei et al.   SOIL BIOLOGY & BIOCHEMISTRY

Control of primary metabolism by a virulence regulatory network promotes robustness in a plant pathogen

(2018) Rémi Peyraud et al.   Nature Communications

Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly

(2018) Kateryna Zhalnina et al.   Nature Microbiology

Root exudates drive the soil-borne legacy of aboveground pathogen infection

(2018) Jun Yuan et al.   Microbiome

Plant Immunity Is Compartmentalized and Specialized in Roots

(2018) Coralie Chuberre et al.   Frontiers in Plant Science

Small molecules below-ground: the role of specialized metabolites in the rhizosphere

(2017) Hassan Massalha et al.   PLANT JOURNAL

Bacterial Wilt in China: History, Current Status, and Future Perspectives

(2017) Gaofei Jiang et al.   Frontiers in Plant Science

Tomato root microbiota and Phytophthora parasitica-associated disease

(2017) Marie Larousse et al.   Microbiome

Pathogen invasion indirectly changes the composition of soil microbiome via shifts in root exudation profile

(2016) Yian Gu et al.   BIOLOGY AND FERTILITY OF SOILS

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages

(2016) Shengjing Shi et al.   ECOLOGY LETTERS

Arabidopsis CLAVATA1 and CLAVATA2 receptors contribute to Ralstonia solanacearumpathogenicity through a miR169-dependent pathway

(2016) Mathieu Hanemian et al.   NEW PHYTOLOGIST

Biochar-stimulated plant performance is strongly linked to microbial diversity and metabolic potential in the rhizosphere

(2016) Max Kolton et al.   NEW PHYTOLOGIST

Chemotaxis signaling systems in model beneficial plant–bacteria associations

(2016) Birgit E. Scharf et al.   PLANT MOLECULAR BIOLOGY

Scaling laws predict global microbial diversity

(2016) Kenneth J. Locey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial diversity and composition in major fresh produce growing soils affected by physiochemical properties and geographic locations

(2016) Jincai Ma et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Agricultural matrix affects differently the alpha and beta structural and functional diversity of soil microbial communities in a fragmented Mediterranean holm oak forest

(2016) Dulce Flores-Rentería et al.   SOIL BIOLOGY & BIOCHEMISTRY

Root–Root Interactions: Towards A Rhizosphere Framework

(2016) Liesje Mommer et al.   TRENDS IN PLANT SCIENCE

Signaling in the Rhizosphere

(2016) Vittorio Venturi et al.   TRENDS IN PLANT SCIENCE

Response of tomato wilt pathogen Ralstonia solanacearum to the volatile organic compounds produced by a biocontrol strain Bacillus amyloliquefaciens SQR-9

(2016) Waseem Raza et al.   Scientific Reports

Continous application of bioorganic fertilizer induced resilient culturable bacteria community associated with banana Fusarium wilt suppression

(2016) Lin Fu et al.   Scientific Reports

Using community analysis to explore bacterial indicators for disease suppression of tobacco bacterial wilt

(2016) Xiaojiao Liu et al.   Scientific Reports

Cross-kingdom similarities in microbiome functions

(2015) Rodrigo Mendes et al.   ISME Journal

Ralstonia solanacearum Uses Inorganic Nitrogen Metabolism for Virulence, ATP Production, and Detoxification in the Oxygen-Limited Host Xylem Environment

(2015) Beth L. Dalsing et al.   mBio

Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health

(2015) Zhong Wei et al.   Nature Communications

Induced Systemic Resistance by Beneficial Microbes

(2014) Corné M.J. Pieterse et al.   Annual Review of Phytopathology

Rhizosphere interactions: root exudates, microbes, and microbial communities

(2014) Xing-Feng Huang et al.   Botany

Adenomatous Polyps Are Driven by Microbe-Instigated Focal Inflammation and Are Controlled by IL-10-Producing T Cells

(2013) K. L. Dennis et al.   CANCER RESEARCH

Plant Growth-Promoting Rhizobacteria Strain Bacillus amyloliquefaciens NJN-6-Enriched Bio-organic Fertilizer Suppressed Fusarium Wilt and Promoted the Growth of Banana Plants

(2013) Jun Yuan et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Pathogenomics of theRalstonia solanacearumSpecies Complex

(2012) Stéphane Genin et al.   Annual Review of Phytopathology

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Functional Molecular Ecological Networks

(2010) J. Zhou et al.   mBio

Comparison of rhizobacterial community composition in soil suppressive or conducive to tobacco black root rot disease

(2009) Martina Kyselková et al.   ISME Journal

Comparative Analysis of Pyrosequencing and a Phylogenetic Microarray for Exploring Microbial Community Structures in the Human Distal Intestine

(2009) Marcus J. Claesson et al.   PLoS One

Root-Secreted Malic Acid Recruits Beneficial Soil Bacteria

(2008) T. Rudrappa et al.   PLANT PHYSIOLOGY