Ensemble disease gene prediction by clinical sample-based networks

Periodic Variation of AAK1 in an Aβ1–42-Induced Mouse Model of Alzheimer’s Disease

(2018) Xue Fu et al.   JOURNAL OF MOLECULAR NEUROSCIENCE

Identification of BAG3 target proteins in anaplastic thyroid cancer cells by proteomic analysis

(2018) Francesca Galdiero et al.   Oncotarget

Disease Gene Prediction by Integrating PPI Networks, Clinical RNA-Seq Data and OMIM Data

(2017) Ping Luo et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Genomic Analyses of Breast Cancer Progression Reveal Distinct Routes of Metastasis Emergence

(2017) Anne Bruun Krøigård et al.   Scientific Reports

Clinical utility of RAS mutations in thyroid cancer: a blurred picture now emerging clearer

(2016) Mingzhao Xing   BMC Medicine

Identifying Individual-Cancer-Related Genes by Rebalancing the Training Samples

(2016) Bolin Chen et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

A scored human protein–protein interaction network to catalyze genomic interpretation

(2016) Taibo Li et al.   NATURE METHODS

Toward a Shared Vision for Cancer Genomic Data

(2016) Robert L. Grossman et al.   NEW ENGLAND JOURNAL OF MEDICINE

COSMIC: somatic cancer genetics at high-resolution

(2016) Simon A. Forbes et al.   NUCLEIC ACIDS RESEARCH

NCOA3 coactivator is a transcriptional target of XBP1 and regulates PERK–eIF2α–ATF4 signalling in breast cancer

(2016) A Gupta et al.   ONCOGENE

Camptothecin targets WRN protein: mechanism and relevance in clinical breast cancer

(2016) Raghavendra A. Shamanna et al.   Oncotarget

Regulatory consequences of neuronal ELAV-like protein binding to coding and non-coding RNAs in human brain

(2016) Claudia Scheckel et al.   eLife

The Role of the Carboxyl-Terminal Sequence of Tau and MAP2 in the Pathogenesis of Dementia

(2016) Ce Xie et al.   Frontiers in Molecular Neuroscience

Associations between Nine Polymorphisms in EXO1 and Cancer Susceptibility: A Systematic Review and Meta-Analysis of 39 Case-control Studies

(2016) Meng Zhang et al.   Scientific Reports

Mutational analysis of PRNP in Alzheimer’s disease and frontotemporal dementia in China

(2016) Weiwei Zhang et al.   Scientific Reports

EW_dmGWAS: edge-weighted dense module search for genome-wide association studies and gene expression profiles

(2015) Quan Wang et al.   BIOINFORMATICS

A fast and high performance multiple data integration algorithm for identifying human disease genes

(2015) Bolin Chen et al.   BMC Medical Genomics

Follicular variant of papillary thyroid cancer in Alström syndrome

(2015) M. Papadakis et al.   Familial Cancer

Synaptotagmins interact with APP and promote Aβ generation

(2015) Vivek Gautam et al.   Molecular Neurodegeneration

Nuclear PARP1 expression and its prognostic significance in breast cancer patients

(2015) Annalisa Mazzotta et al.   TUMOR BIOLOGY

Identifying disease genes by integrating multiple data sources

(2014) Bolin Chen et al.   BMC Medical Genomics

A specific missense mutation in GTF2I occurs at high frequency in thymic epithelial tumors

(2014) Iacopo Petrini et al.   NATURE GENETICS

Similarity network fusion for aggregating data types on a genomic scale

(2014) Bo Wang et al.   NATURE METHODS

Dab2 attenuates brain injury in APP/PS1 mice via targeting transforming growth factor-beta/SMAD signaling

(2014) Chaoying Liu et al.   Neural Regeneration Research

Disease gene identification by using graph kernels and Markov random fields

(2014) BoLin Chen et al.   Science China-Life Sciences

Targeting TopBP1 at a convergent point of multiple oncogenic pathways for cancer therapy

(2014) Pinki Chowdhury et al.   Nature Communications

Identifying protein complexes and functional modules--from static PPI networks to dynamic PPI networks

(2013) B. Chen et al.   BRIEFINGS IN BIOINFORMATICS

Functional characterization of a novel FGFR1OP-RET rearrangement in hematopoietic malignancies

(2013) Daniela Bossi et al.   Molecular Oncology

Prediction and Validation of Gene-Disease Associations Using Methods Inspired by Social Network Analyses

(2013) U. Martin Singh-Blom et al.   PLoS One

Central Role of RET in Thyroid Cancer

(2013) M. Santoro et al.   Cold Spring Harbor Perspectives in Biology

SpliceArray Profiling of Breast Cancer Reveals a Novel Variant of NCOR2/SMRT That Is Associated with Tamoxifen Resistance and Control of ER  Transcriptional Activity

(2012) L. Zhang et al.   CANCER RESEARCH

Amphiphysin-1 protein level changes associated with tau-mediated neurodegeneration

(2012) Héctor J. De Jesús-Cortés et al.   NEUROREPORT

Google Goes Cancer: Improving Outcome Prediction for Cancer Patients by Network-Based Ranking of Marker Genes

(2012) Christof Winter et al.   PLoS Computational Biology

The Impact of Multifunctional Genes on "Guilt by Association" Analysis

(2011) Jesse Gillis et al.   PLoS One

In Silico Gene Prioritization by Integrating Multiple Data Sources

(2011) Yixuan Chen et al.   PLoS One

dmGWAS: dense module searching for genome-wide association studies in protein–protein interaction networks

(2010) Peilin Jia et al.   BIOINFORMATICS

ToppGene Suite for gene list enrichment analysis and candidate gene prioritization

(2009) J. Chen et al.   NUCLEIC ACIDS RESEARCH

Walking the Interactome for Prioritization of Candidate Disease Genes

(2008) Sebastian Köhler et al.   AMERICAN JOURNAL OF HUMAN GENETICS