A specific missense mutation in GTF2I occurs at high frequency in thymic epithelial tumors

Copy Number Aberrations of Genes Regulating Normal Thymus Development in Thymic Epithelial Tumors

(2013) I. Petrini et al.   CLINICAL CANCER RESEARCH

Strelka: accurate somatic small-variant calling from sequenced tumor–normal sample pairs

(2012) Christopher T. Saunders et al.   BIOINFORMATICS

A classification model for distinguishing copy number variants from cancer-related alterations

(2012) Irina Ostrovnaya et al.   BMC BIOINFORMATICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

A novelGTF2I/NCOA2fusion gene emphasizes the role ofNCOA2in soft tissue angiofibroma development

(2012) Elsa Arbajian et al.   GENES CHROMOSOMES & CANCER

Reproducibility of the WHO classification of thymomas: Practical implications

(2012) P.A. Zucali et al.   LUNG CANCER

Copy number aberrations of BCL2 and CDKN2A/B identified by array-CGH in thymic epithelial tumors

(2012) I Petrini et al.   Cell Death & Disease

FusionMap: detecting fusion genes from next-generation sequencing data at base-pair resolution

(2011) Huanying Ge et al.   BIOINFORMATICS

Biochemistry and biology of the inducible multifunctional transcription factor TFII-I: 10years later

(2011) Ananda L. Roy   GENE

Thymic Malignancies: From Clinical Management to Targeted Therapies

(2011) Ronan J. Kelly et al.   JOURNAL OF CLINICAL ONCOLOGY

Initial genome sequencing and analysis of multiple myeloma

(2011) Michael A. Chapman et al.   NATURE

deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data

(2011) Andrew McPherson et al.   PLoS Computational Biology

Insulin-like growth factor-1 receptor and phosphorylated AKT-serine 473 expression in 132 resected thymomas and thymic carcinomas

(2010) Paolo A. Zucali et al.   CANCER

Phase specific functions of the transcription factor TFII-I during cell cycle

(2010) Todd Ashworth et al.   CELL CYCLE

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Thymoma: A Focus on Current Therapeutic Management

(2010) Nicolas Girard et al.   Journal of Thoracic Oncology

Expression and Mutational Status of c-kit in Thymic Epithelial Tumors

(2010) Iacopo Petrini et al.   Journal of Thoracic Oncology

Signatures of mutation and selection in the cancer genome

(2010) Graham R. Bignell et al.   NATURE

A method and server for predicting damaging missense mutations

(2010) Ivan A Adzhubei et al.   NATURE METHODS

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

VarScan: variant detection in massively parallel sequencing of individual and pooled samples

(2009) Daniel C. Koboldt et al.   BIOINFORMATICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm

(2009) Prateek Kumar et al.   Nature Protocols

Interobserver variation in the classification of thymic tumours – a multicentre study using the WHO classification system

(2008) E T Verghese et al.   HISTOPATHOLOGY

DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome

(2008) Timothy J. Ley et al.   NATURE

Essential functions of the Williams-Beuren syndrome-associated TFII-I genes in embryonic development

(2008) B. Enkhmandakh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Thymic epithelial tumours: A population-based study of the incidence, diagnostic procedures and therapy

(2007) Wouter K. de Jong et al.   EUROPEAN JOURNAL OF CANCER