Challenges of cultivated meat production and applications of genome‐scale metabolic modeling

Challenges in the quest for ‘clean meat’

(2019) Lieven Thorrez et al.   NATURE BIOTECHNOLOGY

What's in a name? Consumer perceptions of in vitro meat under different names

(2019) Christopher J. Bryant et al.   APPETITE

Strategies for overcoming aversion to unnaturalness: The case of clean meat

(2019) Christopher J. Bryant et al.   MEAT SCIENCE

Predicting Metabolism from Gene Expression in an Improved Whole-Genome Metabolic Network Model of Danio rerio

(2019) Leonie van Steijn et al.   Zebrafish

Opportunities for applying biomedical production and manufacturing methods to the development of the clean meat industry

(2018) Elizabeth A. Specht et al.   BIOCHEMICAL ENGINEERING JOURNAL

Consumer acceptance of cultured meat: A systematic review

(2018) Christopher Bryant et al.   MEAT SCIENCE

Elucidation of photoautotrophic carbon flux topology in Synechocystis PCC 6803 using genome-scale carbon mapping models

(2018) Saratram Gopalakrishnan et al.   METABOLIC ENGINEERING

Recon3D enables a three-dimensional view of gene variation in human metabolism

(2018) Elizabeth Brunk et al.   NATURE BIOTECHNOLOGY

KBase: The United States Department of Energy Systems Biology Knowledgebase

(2018) Adam P Arkin et al.   NATURE BIOTECHNOLOGY

Genome-scale fluxome of Synechococcus elongatus UTEX 2973 using transient 13C-labeling data

(2018) John I. Hendry et al.   PLANT PHYSIOLOGY

RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor

(2018) Hao Wang et al.   PLoS Computational Biology

Genome-Scale Metabolic Modeling of Archaea Lends Insight into Diversity of Metabolic Function

(2017) ShengShee Thor et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

SteadyCom: Predicting microbial abundances while ensuring community stability

(2017) Siu Hung Joshua Chan et al.   PLoS Computational Biology

Microalgae metabolites: A rich source for food and medicine

(2017) Ramaraj Sathasivam et al.   SAUDI JOURNAL OF BIOLOGICAL SCIENCES

Mammalian Systems Biotechnology Reveals Global Cellular Adaptations in a Recombinant CHO Cell Line

(2017) Faraaz Noor Khan Yusufi et al.   Cell Systems

Advances in recombinant antibody manufacturing

(2016) Renate Kunert et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Optimal tracers for parallel labeling experiments and 13 C metabolic flux analysis: A new precision and synergy scoring system

(2016) Scott B. Crown et al.   METABOLIC ENGINEERING

13 C metabolic flux analysis of microbial and mammalian systems is enhanced with GC-MS measurements of glycogen and RNA labeling

(2016) Christopher P. Long et al.   METABOLIC ENGINEERING

Global Metabolic Reconstruction and Metabolic Gene Evolution in the Cattle Genome

(2016) Woonsu Kim et al.   PLoS One

A Consensus Genome-scale Reconstruction of Chinese Hamster Ovary Cell Metabolism

(2016) Hooman Hefzi et al.   Cell Systems

Effect of Antimicrobial Use in Agricultural Animals on Drug-resistant Foodborne Campylobacteriosis in Humans: A Systematic Literature Review

(2015) M.A. McCrackin et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

Meat analogues: Health promising sustainable meat substitutes

(2015) Pavan Kumar et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

Antibiotics, Bacteria, and Antibiotic Resistance Genes: Aerial Transport from Cattle Feed Yards via Particulate Matter

(2015) Andrew D. McEachran et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

Comparing foodborne illness risks among meat commodities in the United States

(2015) David J. Hsi et al.   FOOD CONTROL

13C metabolic flux analysis at a genome-scale

(2015) Saratram Gopalakrishnan et al.   METABOLIC ENGINEERING

A case for systemic environmental analysis of cultured meat

(2015) Carolyn S Mattick et al.   Journal of Integrative Agriculture

Alternatives for large-scale production of cultured beef: A review

(2015) Matilda S M Moritz et al.   Journal of Integrative Agriculture

Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways

(2015) Zachary A. King et al.   PLoS Computational Biology

Multiplicity of Steady States in Glycolysis and Shift of Metabolic State in Cultured Mammalian Cells

(2015) Bhanu Chandra Mulukutla et al.   PLoS One

The Ticking Clock: Addressing Farm Animal Welfare in Emerging Countries

(2014) Marina A. G. von Keyserlingk et al.   JOURNAL OF AGRICULTURAL & ENVIRONMENTAL ETHICS

Identification of anticancer drugs for hepatocellular carcinoma through personalized genome-scale metabolic modeling

(2014) R. Agren et al.   Molecular Systems Biology

Cultured meat: every village its own factory?

(2014) Cor van der Weele et al.   TRENDS IN BIOTECHNOLOGY

Path2Models: large-scale generation of computational models from biochemical pathway maps

(2013) Finja Büchel et al.   BMC Systems Biology

Development of a minimal chemically defined medium for Ketogulonicigenium vulgare WSH001 based on its genome-scale metabolic model

(2013) Shicun Fan et al.   JOURNAL OF BIOTECHNOLOGY

Publishing 13C metabolic flux analysis studies: A review and future perspectives

(2013) Scott B. Crown et al.   METABOLIC ENGINEERING

The zebrafish reference genome sequence and its relationship to the human genome

(2013) Kerstin Howe et al.   NATURE

Cultured meat from stem cells: Challenges and prospects

(2012) Mark J. Post   MEAT SCIENCE

A metabolic network approach for the identification and prioritization of antimicrobial drug targets

(2012) Arvind K. Chavali et al.   TRENDS IN MICROBIOLOGY

TIGER: Toolbox for integrating genome-scale metabolic models, expression data, and transcriptional regulatory networks

(2011) Paul A Jensen et al.   BMC Systems Biology

Environmental Impacts of Cultured Meat Production

(2011) Hanna L. Tuomisto et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Bioproduction of mushroom mycelium of Agaricus bisporus by commercial submerged fermentation for the production of meat analogue

(2011) Kyoungju Kim et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Metabolic flux analysis of CHO cells at growth and non-growth phases using isotopic tracers and mass spectrometry

(2011) Woo Suk Ahn et al.   METABOLIC ENGINEERING

Zea mays iRS1563: A Comprehensive Genome-Scale Metabolic Reconstruction of Maize Metabolism

(2011) Rajib Saha et al.   PLoS One

Optimizing amino acid composition of CHO cell culture media for a fusion protein production

(2011) Zizhuo Xing et al.   PROCESS BIOCHEMISTRY

Computationally efficient flux variability analysis

(2010) Steinn Gudmundsson et al.   BMC BIOINFORMATICS

A protocol for generating a high-quality genome-scale metabolic reconstruction

(2010) Ines Thiele et al.   Nature Protocols

Optimization of chemically defined cell culture media – Replacing fetal bovine serum in mammalian in vitro methods

(2010) J. van der Valk et al.   TOXICOLOGY IN VITRO

Amino acid transceptors: gate keepers of nutrient exchange and regulators of nutrient signaling

(2009) Harinder S. Hundal et al.   AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM

Growth, digestive capacity and intestinal microflora of juvenile Jian carp (Cyprinus carpiovar. Jian) fed graded levels of dietary inositol

(2009) Wei-Dan Jiang et al.   AQUACULTURE RESEARCH

Reconstruction of metabolic pathways for the cattle genome

(2009) Seongwon Seo et al.   BMC Systems Biology

Metabolic flux analysis in mammalian cell culture

(2009) Lake-Ee Quek et al.   METABOLIC ENGINEERING

A Genome-Scale Metabolic Model of Arabidopsis and Some of Its Properties

(2009) M. G. Poolman et al.   PLANT PHYSIOLOGY

The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution

(2009) et al.   SCIENCE

A Genome-Scale Metabolic Reconstruction of Mycoplasma genitalium, iPS189

(2009) Patrick F. Suthers et al.   PLoS Computational Biology

Identification of optimal measurement sets for complete flux elucidation in metabolic flux analysis experiments

(2008) YoungJung Chang et al.   BIOTECHNOLOGY AND BIOENGINEERING

Insulin signaling pathways and cardiac growth

(2008) Brian J. DeBosch et al.   JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY