Direct Sequencing of Cryptosporidium in Stool Samples for Public Health
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Title
Direct Sequencing of Cryptosporidium in Stool Samples for Public Health
Authors
Keywords
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Journal
Frontiers in Public Health
Volume 7, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2019-12-11
DOI
10.3389/fpubh.2019.00360
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Note: Only part of the references are listed.- Genetically diverse Plasmodium falciparum infections, within-host competition and symptomatic malaria in humans
- (2019) Paul Sondo et al. Scientific Reports
- Evolutionary genomics of anthroponosis in Cryptosporidium
- (2019) Johanna L. Nader et al. Nature Microbiology
- Lysyl-tRNA synthetase as a drug target in malaria and cryptosporidiosis
- (2019) Beatriz Baragaña et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Analysis of the Cryptosporidium spp. and gp60 subtypes linked to human outbreaks of cryptosporidiosis in England and Wales, 2009 to 2017
- (2019) Rachel M. Chalmers et al. Parasites & Vectors
- Evolution of Cryptosporidium
- (2019) Jessica C. Kissinger Nature Microbiology
- Shedding of Cryptosporidium in calves and dams: evidence of re-infection and shedding of different gp60 subtypes
- (2019) Sarah Thomson et al. PARASITOLOGY
- Cryptosporidiosis Outbreaks — United States, 2009–2017
- (2019) Radhika Gharpure et al. MMWR-MORBIDITY AND MORTALITY WEEKLY REPORT
- Genomics and molecular epidemiology of Cryptosporidium species
- (2018) Asis Khan et al. ACTA TROPICA
- Cryptosporidium genotyping in Europe: The current status and processes for a harmonised multi-locus genotyping scheme
- (2018) Rachel M. Chalmers et al. EXPERIMENTAL PARASITOLOGY
- Genetic Diversity of Cryptosporidium hominis in a Bangladeshi Community as Revealed by Whole-Genome Sequencing
- (2018) Carol A Gilchrist et al. JOURNAL OF INFECTIOUS DISEASES
- Case-Control Study of Cryptosporidium Transmission in Bangladeshi Households
- (2018) Poonum S Korpe et al. CLINICAL INFECTIOUS DISEASES
- Genetic Diversity and Population Structure of Cryptosporidium
- (2018) Yaoyu Feng et al. TRENDS IN PARASITOLOGY
- Risk Factors for Sporadic Cryptosporidiosis in the Netherlands: Analysis of a 3-Year Population Based Case-Control Study Coupled With Genotyping, 2013–2016
- (2018) Laura M Nic Lochlainn et al. JOURNAL OF INFECTIOUS DISEASES
- Improving the genotyping resolution of Cryptosporidium hominis subtype IbA10G2 using one step PCR-based amplicon sequencing
- (2017) Jessica Beser et al. INFECTION GENETICS AND EVOLUTION
- Next Generation Sequencing uncovers within-host differences in the genetic diversity of Cryptosporidium gp60 subtypes
- (2017) Alireza Zahedi et al. INTERNATIONAL JOURNAL FOR PARASITOLOGY
- Cryptosporidium and cryptosporidiosis: The Asian perspective
- (2017) Mohammad-Reza Mahmoudi et al. INTERNATIONAL JOURNAL OF HYGIENE AND ENVIRONMENTAL HEALTH
- Estimates of global, regional, and national morbidity, mortality, and aetiologies of diarrhoeal diseases: a systematic analysis for the Global Burden of Disease Study 2015
- (2017) Christopher Troeger et al. LANCET INFECTIOUS DISEASES
- Local and global genetic diversity of protozoan parasites: Spatial distribution of Cryptosporidium and Giardia genotypes
- (2017) Juan C. Garcia–R et al. PLoS Neglected Tropical Diseases
- Long-term Cryptosporidium typing reveals the aetiology and species-specific epidemiology of human cryptosporidiosis in England and Wales, 2000 to 2003
- (2017) R M Chalmers et al. Eurosurveillance
- Cryptosporidium as a testbed for single cell genome characterization of unicellular eukaryotes
- (2016) Karin Troell et al. BMC GENOMICS
- Human cryptosporidiosis in Europe
- (2016) S.M. Cacciò et al. CLINICAL MICROBIOLOGY AND INFECTION
- Cryptosporidium and cryptosporidiosis: the African perspective
- (2016) Hebatalla M. Aldeyarbi et al. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH
- Towards a consensus on genotyping schemes for surveillance and outbreak investigations ofCryptosporidium, Berlin, June 2016
- (2016) RM Chalmers et al. Eurosurveillance
- Discovery of new variable number tandem repeat loci in multiple Cryptosporidium parvum genomes for the surveillance and investigation of outbreaks of cryptosporidiosis
- (2016) Gregorio Pérez-Cordón et al. EXPERIMENTAL PARASITOLOGY
- Cryptosporidium within-host genetic diversity: systematic bibliographical search and narrative overview
- (2016) Alex Grinberg et al. INTERNATIONAL JOURNAL FOR PARASITOLOGY
- Genomic Variation in IbA10G2 and Other Patient-Derived Cryptosporidium hominis Subtypes
- (2016) Per Sikora et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Molecular characterization of human Cryptosporidium spp. isolates after an unusual increase in late summer 2012
- (2016) Jeroen H. Roelfsema et al. Parasites & Vectors
- Intra-Species Genetic Diversity and Clonal Structure of Cryptosporidium parvum in Sheep Farms in a Confined Geographical Area in Northeastern Spain
- (2016) Ana Ramo et al. PLoS One
- Intra-Species Diversity and Panmictic Structure of Cryptosporidium parvum Populations in Cattle Farms in Northern Spain
- (2016) Ana Ramo et al. PLoS One
- Annotated draft genome sequences of three species ofCryptosporidium:Cryptosporidium meleagridisisolate UKMEL1,C. baileyiisolate TAMU-09Q1 andC. hominisisolates TU502_2012 and UKH1
- (2016) Olukemi O. Ifeonu et al. Pathogens and Disease
- Comparative genomic analysis reveals occurrence of genetic recombination in virulent Cryptosporidium hominis subtypes and telomeric gene duplications in Cryptosporidium parvum
- (2015) Yaqiong Guo et al. BMC GENOMICS
- Generation of whole genome sequences of new Cryptosporidium hominis and Cryptosporidium parvum isolates directly from stool samples
- (2015) Stephen J. Hadfield et al. BMC GENOMICS
- Whole-Genome Sequencing for National Surveillance of Shiga Toxin–ProducingEscherichia coliO157
- (2015) Timothy J. Dallman et al. CLINICAL INFECTIOUS DISEASES
- Geographical segregation of Cryptosporidium parvum multilocus genotypes in Europe
- (2015) Simone M. Cacciò et al. INFECTION GENETICS AND EVOLUTION
- Subtyping Novel Zoonotic Pathogen Cryptosporidium Chipmunk Genotype I
- (2015) Yaqiong Guo et al. JOURNAL OF CLINICAL MICROBIOLOGY
- A review of the global burden, novel diagnostics, therapeutics, and vaccine targets for cryptosporidium
- (2015) William Checkley et al. LANCET INFECTIOUS DISEASES
- Prevalence, species identification and genotyping Cryptosporidium from livestock and deer in a catchment in the Cairngorms with a history of a contaminated public water supply
- (2015) Beth Wells et al. Parasites & Vectors
- A comparison of sequence and length polymorphism for genotyping Cryptosporidium isolates
- (2015) G. WIDMER et al. PARASITOLOGY
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- An Outbreak of Cryptosporidium parvum across England & Scotland Associated with Consumption of Fresh Pre-Cut Salad Leaves, May 2012
- (2015) Caoimhe McKerr et al. PLoS One
- The Evolution of Respiratory Cryptosporidiosis: Evidence for Transmission by Inhalation
- (2014) J. K. Sponseller et al. CLINICAL MICROBIOLOGY REVIEWS
- Population structure of natural and propagated isolates ofCryptosporidium parvum,C. hominisandC. meleagridis
- (2014) Giovanni Widmer et al. ENVIRONMENTAL MICROBIOLOGY
- Symptomatic and asymptomatic secondary transmission of Cryptosporidium parvum following two related outbreaks in schoolchildren
- (2014) Ø. H. JOHANSEN et al. EPIDEMIOLOGY AND INFECTION
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- (2014) Yaqiong Guo et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Cryptosporidium parvum IId family: clonal population and dispersal from Western Asia to other geographical regions
- (2014) Rongjun Wang et al. Scientific Reports
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- (2013) Samuel Alizon et al. ECOLOGY LETTERS
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- (2013) H. LANGE et al. EPIDEMIOLOGY AND INFECTION
- Population genetic characterisation of dominant Cryptosporidium parvum subtype IIaA15G2R1
- (2013) Yaoyu Feng et al. INTERNATIONAL JOURNAL FOR PARASITOLOGY
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- (2013) Y. Feng et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Burden and aetiology of diarrhoeal disease in infants and young children in developing countries (the Global Enteric Multicenter Study, GEMS): a prospective, case-control study
- (2013) Karen L Kotloff et al. LANCET
- “Barriers" to Child Development and Human Potential: The Case for Including the “Neglected Enteric Protozoa" (NEP) and Other Enteropathy-Associated Pathogens in the NTDs
- (2013) Luther A. Bartelt et al. PLoS Neglected Tropical Diseases
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- (2012) Rosanna Drumo et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
- (2012) Y. Peng et al. BIOINFORMATICS
- Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
- (2012) H. Thorvaldsdottir et al. BRIEFINGS IN BIOINFORMATICS
- Assessment of polymorphic genetic markers for multi-locus typing of Cryptosporidium parvum and Cryptosporidium hominis
- (2012) Guy Robinson et al. EXPERIMENTAL PARASITOLOGY
- Comparative genome analysis of two Cryptosporidium parvum isolates with different host range
- (2012) Giovanni Widmer et al. INFECTION GENETICS AND EVOLUTION
- Extensive intra-host genetic diversity uncovered in Cryptosporidium parvum using Next Generation Sequencing
- (2012) A. Grinberg et al. INFECTION GENETICS AND EVOLUTION
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study
- (2012) Timothy M Walker et al. LANCET INFECTIOUS DISEASES
- Microevolutionary analysis of Clostridium difficile genomes to investigate transmission
- (2012) Xavier Didelot et al. GENOME BIOLOGY
- Molecular Epidemiology and Spatial Distribution of a Waterborne Cryptosporidiosis Outbreak in Australia
- (2011) Liette S. Waldron et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The epidemiology of sporadic human infections with unusual cryptosporidia detected during routine typing in England and Wales, 2000–2008
- (2011) K. ELWIN et al. EPIDEMIOLOGY AND INFECTION
- Genomics and population biology of Cryptosporidium species
- (2011) G. WIDMER et al. PARASITE IMMUNOLOGY
- Significance of Wall Structure, Macromolecular Composition, and Surface Polymers to the Survival and Transport of Cryptosporidium parvum Oocysts
- (2010) M. B. Jenkins et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Comparison of Single- and Multilocus Genetic Diversity in the Protozoan Parasites Cryptosporidium parvum and C. hominis
- (2010) G. Widmer et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Epidemiology of anthroponotic and zoonotic human cryptosporidiosis in England and Wales, 2004–2006
- (2010) R. M. CHALMERS et al. EPIDEMIOLOGY AND INFECTION
- Human immune responses in cryptosporidiosis
- (2010) Anoli Borad et al. Future Microbiology
- Genetics of susceptibility to infection with enteric pathogens
- (2009) Jose Flores et al. CURRENT OPINION IN INFECTIOUS DISEASES
- Minireview: Clinical cryptosporidiosis
- (2009) Rachel M. Chalmers et al. EXPERIMENTAL PARASITOLOGY
- Molecular epidemiology of cryptosporidiosis: An update
- (2009) Lihua Xiao EXPERIMENTAL PARASITOLOGY
- Subtype Analysis of Cryptosporidium Specimens from Sporadic Cases in Colorado, Idaho, New Mexico, and Iowa in 2007: Widespread Occurrence of One Cryptosporidium hominis Subtype and Case History of an Infection with the Cryptosporidium Horse Genotype
- (2009) L. Xiao et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Spatial and Temporal Epidemiology of Sporadic Human Cryptosporidiosis in Scotland
- (2009) K. G. J. Pollock et al. Zoonoses and Public Health
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Inferences about the Global Population Structures of Cryptosporidium parvum and Cryptosporidium hominis
- (2008) S. Tanriverdi et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Cryptosporidium Genotypes and Subtypes in Lambs and Goat Kids in Spain
- (2008) J. Quilez et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The prevalence of Cryptosporidium species and subtypes in human faecal samples in Ireland
- (2008) A. ZINTL et al. EPIDEMIOLOGY AND INFECTION
- Microsatellite Typing of Cryptosporidium parvum in Isolates from a Waterborne Outbreak
- (2008) P. R. Hunter et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Molecular epidemiology of Cryptosporidium in humans and cattle in The Netherlands
- (2007) Peter R. Wielinga et al. INTERNATIONAL JOURNAL FOR PARASITOLOGY
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