Comparative Pangenomics of the Mammalian Gut Commensal Bifidobacterium longum
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Comparative Pangenomics of the Mammalian Gut Commensal Bifidobacterium longum
Authors
Keywords
-
Journal
Microorganisms
Volume 8, Issue 1, Pages 7
Publisher
MDPI AG
Online
2019-12-20
DOI
10.3390/microorganisms8010007
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- N-Glycan Utilization by Bifidobacterium Gut Symbionts Involves a Specialist β-Mannosidase
- (2019) Rosa Lorizolla Cordeiro et al. JOURNAL OF MOLECULAR BIOLOGY
- Gene-trait matching across the Bifidobacterium longum pan-genome reveals considerable diversity in carbohydrate catabolism among human infant strains
- (2018) Silvia Arboleya et al. BMC GENOMICS
- UBCG: Up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction
- (2018) Seong-In Na et al. JOURNAL OF MICROBIOLOGY
- HMMER web server: 2018 update
- (2018) Simon C Potter et al. NUCLEIC ACIDS RESEARCH
- Genomic diversity and distribution of Bifidobacterium longum subsp. longum across the human lifespan
- (2018) Toshitaka Odamaki et al. Scientific Reports
- Database resources of the National Center for Biotechnology Information
- (2018) Eric W Sayers et al. NUCLEIC ACIDS RESEARCH
- The Pfam protein families database in 2019
- (2018) Sara El-Gebali et al. NUCLEIC ACIDS RESEARCH
- Bifidobacterium Bacteremia: Clinical Characteristics and a Genomic Approach To Assess Pathogenicity
- (2017) Eirin Esaiassen et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
- (2017) Jaime Huerta-Cepas et al. MOLECULAR BIOLOGY AND EVOLUTION
- GenBank
- (2017) Dennis A Benson et al. NUCLEIC ACIDS RESEARCH
- Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens
- (2016) Leighton Pritchard et al. Analytical Methods
- Inulin-type fructan fermentation by bifidobacteria depends on the strain rather than the species and region in the human intestine
- (2016) Marija Selak et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- IMG/M: integrated genome and metagenome comparative data analysis system
- (2016) I-Min A. Chen et al. NUCLEIC ACIDS RESEARCH
- Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.
- (2015) Ryan R. Wick et al. BIOINFORMATICS
- Roary: rapid large-scale prokaryote pan genome analysis
- (2015) Andrew J. Page et al. BIOINFORMATICS
- Pangenome analysis of Bifidobacterium longum and site-directed mutagenesis through by-pass of restriction-modification systems
- (2015) A. O’Callaghan et al. BMC GENOMICS
- eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
- (2015) Jaime Huerta-Cepas et al. NUCLEIC ACIDS RESEARCH
- Intraspecies Genomic Diversity and Long-Term Persistence of Bifidobacterium longum
- (2015) Andrei V. Chaplin et al. PLoS One
- Subspeciation of Bifidobacterium longum by multilocus approaches and amplified fragment length polymorphism: Description of B. longum subsp. suillum subsp. nov., isolated from the faeces of piglets
- (2015) Emiko Yanokura et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut
- (2015) Christian Milani et al. Scientific Reports
- RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
- (2015) Thomas Brettin et al. Scientific Reports
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Bifidobacterium longum Bacteremia in Preterm Infants Receiving Probiotics
- (2014) Claire Bertelli et al. CLINICAL INFECTIOUS DISEASES
- Evaluation of bifidobacterial community composition in the human gut by means of a targeted amplicon sequencing (ITS) protocol
- (2014) Christian Milani et al. FEMS MICROBIOLOGY ECOLOGY
- Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes
- (2014) M. Kim et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Bacterial collagen-like proteins that form triple-helical structures
- (2014) Zhuoxin Yu et al. JOURNAL OF STRUCTURAL BIOLOGY
- Metabolic fate of neutral human milk oligosaccharides in exclusively breast-fed infants
- (2014) Viktoria Dotz et al. MOLECULAR NUTRITION & FOOD RESEARCH
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- Gut-derived short-chain fatty acids are vividly assimilated into host carbohydrates and lipids
- (2013) Gijs den Besten et al. AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY
- A quantitative and comprehensive method to analyze human milk oligosaccharide structures in the urine and feces of infants
- (2013) Maria Lorna A. De Leoz et al. ANALYTICAL AND BIOANALYTICAL CHEMISTRY
- Recent development of phosphorylases possessing large potential for oligosaccharide synthesis
- (2013) Hiroyuki Nakai et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- α-l-Fucosidase from Paenibacillus thiaminolyticus: Its hydrolytic and transglycosylation abilities
- (2013) Eva Benešová et al. GLYCOBIOLOGY
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- The carbohydrate-active enzymes database (CAZy) in 2013
- (2013) Vincent Lombard et al. NUCLEIC ACIDS RESEARCH
- The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
- (2013) Ross Overbeek et al. NUCLEIC ACIDS RESEARCH
- Release and utilization of N-acetyl-d-glucosamine from human milk oligosaccharides by Bifidobacterium longum subsp. infantis
- (2012) Daniel Garrido et al. ANAEROBE
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- dbCAN: a web resource for automated carbohydrate-active enzyme annotation
- (2012) Yanbin Yin et al. NUCLEIC ACIDS RESEARCH
- Bifidobacterium longum subsp. infantis ATCC 15697 α-Fucosidases Are Active on Fucosylated Human Milk Oligosaccharides
- (2011) David A. Sela et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Carbohydrate metabolism in Bifidobacteria
- (2011) Karina Pokusaeva et al. Genes and Nutrition
- Bifidobacterial utilization of human milk oligosaccharides
- (2011) David A. Sela INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
- Molecular Cloning and Catalytic Mechanism of a Novel Glycosphingolipid-degrading β-N-Acetylgalactosaminidase fromPaenibacillussp. TS12
- (2011) Tomomi Sumida et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Bifidobacteria can protect from enteropathogenic infection through production of acetate
- (2011) Shinji Fukuda et al. NATURE
- raxmlGUI: a graphical front-end for RAxML
- (2011) Daniele Silvestro et al. ORGANISMS DIVERSITY & EVOLUTION
- Proteomics analysis of Bifidobacterium longum NCC2705 growing on glucose, fructose, mannose, xylose, ribose, and galactose
- (2011) Dawei Liu et al. PROTEOMICS
- Broad Conservation of Milk Utilization Genes in Bifidobacterium longum subsp. infantis as Revealed by Comparative Genomic Hybridization
- (2010) R. G. LoCascio et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood
- (2010) M. Csuos BIOINFORMATICS
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- Genomics and ecological overview of the genus Bifidobacterium
- (2010) Francesca Turroni et al. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
- Nursing our microbiota: molecular linkages between bifidobacteria and milk oligosaccharides
- (2010) David A. Sela et al. TRENDS IN MICROBIOLOGY
- Exploring the Diversity of the Bifidobacterial Population in the Human Intestinal Tract
- (2009) F. Turroni et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Functional Characterization of Xyloglucan Glycosynthases from GH7, GH12, and GH16 Scaffolds
- (2009) Fredrika Gullfot et al. BIOMACROMOLECULES
- Shifting the genomic gold standard for the prokaryotic species definition
- (2009) Michael Richter et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Interaction of probiotic Lactobacillus and Bifidobacterium strains with human intestinal epithelial cells: Adhesion properties, competition against enteropathogens and modulation of IL-8 production
- (2008) M. Candela et al. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
- Proposal to reclassify the three biotypes of Bifidobacterium longum as three subspecies: Bifidobacterium longum subsp. longum subsp. nov., Bifidobacterium longum subsp. infantis comb. nov. and Bifidobacterium longum subsp. suis comb. nov.
- (2008) P. Mattarelli et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome
- (2008) D. A. Sela et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now