A Computational Study of Potential miRNA-Disease Association Inference Based on Ensemble Learning and Kernel Ridge Regression

An integrated framework for the identification of potential miRNA-disease association based on novel negative samples extraction strategy

(2019) Chun-Chun Wang et al.   RNA Biology

Adaptive boosting-based computational model for predicting potential miRNA-disease associations

(2019) Yan Zhao et al.   BIOINFORMATICS

MiRGOFS: a GO-based functional similarity measurement for miRNAs, with applications to the prediction of miRNA subcellular localization and miRNA–disease association

(2018) Yang Yang et al.   BIOINFORMATICS

BNPMDA: Bipartite Network Projection for MiRNA–Disease Association prediction

(2018) Xing Chen et al.   BIOINFORMATICS

Regulatory variants: from detection to predicting impact

(2018) Elena Rojano et al.   BRIEFINGS IN BIOINFORMATICS

ELLPMDA: Ensemble learning and link prediction for miRNA-disease association prediction

(2018) Xing Chen et al.   RNA Biology

EGBMMDA: Extreme Gradient Boosting Machine for MiRNA-Disease Association prediction

(2018) Xing Chen et al.   Cell Death & Disease

OUP accepted manuscript

(2018)   BRIEFINGS IN BIOINFORMATICS

Predicting microRNA-disease associations using bipartite local models and hubness-aware regression

(2018) Xing Chen et al.   RNA Biology

MDHGI: Matrix Decomposition and Heterogeneous Graph Inference for miRNA-disease association prediction

(2018) Xing Chen et al.   PLoS Computational Biology

Drug-target interaction prediction using ensemble learning and dimensionality reduction

(2017) Ali Ezzat et al.   METHODS

A novel computational model based on super-disease and miRNA for potential miRNA–disease association prediction

(2017) Xing Chen et al.   Molecular BioSystems

RKNNMDA: Ranking-based KNN for MiRNA-Disease Association prediction

(2017) Xing Chen et al.   RNA Biology

Analysis of salivary microRNA expression profiles and identification of novel biomarkers in esophageal cancer

(2017) Jiang Du et al.   Oncology Letters

MCMDA: Matrix completion for MiRNA-disease association prediction

(2017) Jian-Qiang Li et al.   Oncotarget

Large-scale prediction of microRNA-disease associations by combinatorial prioritization algorithm

(2017) Hua Yu et al.   Scientific Reports

LRSSLMDA: Laplacian Regularized Sparse Subspace Learning for MiRNA-Disease Association prediction

(2017) Xing Chen et al.   PLoS Computational Biology

PBMDA: A novel and effective path-based computational model for miRNA-disease association prediction

(2017) Zhu-Hong You et al.   PLoS Computational Biology

Long non-coding RNAs and complex diseases: from experimental results to computational models

(2016) Xing Chen et al.   BRIEFINGS IN BIOINFORMATICS

HGIMDA: Heterogeneous graph inference for miRNA-disease association prediction

(2016) Xing Chen et al.   Oncotarget

NLLSS: Predicting Synergistic Drug Combinations Based on Semi-supervised Learning

(2016) Xing Chen et al.   PLoS Computational Biology

WBSMDA: Within and Between Score for MiRNA-Disease Association prediction

(2016) Xing Chen et al.   Scientific Reports

Prediction of miRNA-disease associations with a vector space model

(2016) Claude Pasquier et al.   Scientific Reports

Network Consistency Projection for Human miRNA-Disease Associations Inference

(2016) Changlong Gu et al.   Scientific Reports

Prediction of potential disease-associated microRNAs based on random walk

(2015) Ping Xuan et al.   BIOINFORMATICS

Drug–target interaction prediction: databases, web servers and computational models

(2015) Xing Chen et al.   BRIEFINGS IN BIOINFORMATICS

MicroRNA (miRNA) in cancer

(2015) Kaladhar B Reddy   Cancer Cell International

Identification of a microRNA signature associated with risk of distant metastasis in nasopharyngeal carcinoma

(2015) Jeff P. Bruce et al.   Oncotarget

RBMMMDA: predicting multiple types of disease-microRNA associations

(2015) Xing Chen et al.   Scientific Reports

Inductive matrix completion for predicting gene-disease associations

(2014) N. Natarajan et al.   BIOINFORMATICS

The complexity of miRNA-mediated repression

(2014) A Wilczynska et al.   CELL DEATH AND DIFFERENTIATION

Epidemiology of esophageal cancer

(2014) Yuwei Zhang   WORLD JOURNAL OF GASTROENTEROLOGY

Semi-supervised learning for potential human microRNA-disease associations inference

(2014) Xing Chen et al.   Scientific Reports

Protein-driven inference of miRNA-disease associations

(2013) S. Mork et al.   BIOINFORMATICS

Walking the interactome to identify human miRNA-disease associations through the functional link between miRNA targets and disease genes

(2013) Hongbo Shi et al.   BMC Systems Biology

HMDD v2.0: a database for experimentally supported human microRNA and disease associations

(2013) Yang Li et al.   NUCLEIC ACIDS RESEARCH

Predicting Drug-Target Interactions for New Drug Compounds Using a Weighted Nearest Neighbor Profile

(2013) Twan van Laarhoven et al.   PLoS One

Prediction of microRNAs Associated with Human Diseases Based on Weighted k Most Similar Neighbors

(2013) Ping Xuan et al.   PLoS One

MicroRNA profiling in denatured dermis of deep burn patients

(2012) Pengfei Liang et al.   BURNS

Genetic variation in a hsa-let-7 binding site in RAD52 is associated with breast cancer susceptibility

(2012) Y. Jiang et al.   CARCINOGENESIS

miR-192, miR-194, miR-215, miR-200c and miR-141 are downregulated and their common target ACVR2B is strongly expressed in renal childhood neoplasms

(2012) U. Senanayake et al.   CARCINOGENESIS

RWRMDA: predicting novel human microRNA–disease associations

(2012) Xing Chen et al.   Molecular BioSystems

Up-Regulation of MicroRNA-21 Correlates with Lower Kidney Cancer Survival

(2012) Mohd Saif Zaman et al.   PLoS One

Gaussian interaction profile kernels for predicting drug–target interaction

(2011) Twan van Laarhoven et al.   BIOINFORMATICS

MicroRNA profiles of t(14;18)-negative follicular lymphoma support a late germinal center B-cell phenotype

(2011) E. Leich et al.   BLOOD

Identification of altered MicroRNA expression in canine lymphoid cell lines and cases of B- and T-Cell lymphomas

(2011) Elizabeth Uhl et al.   GENES CHROMOSOMES & CANCER

Cardiovascular Importance of the MicroRNA-23/27/24 Family

(2011) CLAUDIA BANG et al.   MICROCIRCULATION

Prioritizing Candidate Disease miRNAs by Topological Features in the miRNA Target-Dysregulated Network: Case Study of Prostate Cancer

(2011) J. Xu et al.   MOLECULAR CANCER THERAPEUTICS

Aberrant expression of let-7a miRNA in the blood of non-small cell lung cancer patients

(2011) Kim   Molecular Medicine Reports

Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases

(2010) Dong Wang et al.   BIOINFORMATICS

dbDEMC: a database of differentially expressed miRNAs in human cancers

(2010) Zhen Yang et al.   BMC GENOMICS

MiR-21 overexpression in human primary squamous cell lung carcinoma is associated with poor patient prognosis

(2010) Wen Gao et al.   JOURNAL OF CANCER RESEARCH AND CLINICAL ONCOLOGY

The roles of microRNA in cancer and apoptosis

(2008) Niamh Lynam-Lennon et al.   BIOLOGICAL REVIEWS

miR2Disease: a manually curated database for microRNA deregulation in human disease

(2008) Q. Jiang et al.   NUCLEIC ACIDS RESEARCH