RKNNMDA: Ranking-based KNN for MiRNA-Disease Association prediction

PBHMDA: Path-Based Human Microbe-Disease Association Prediction

(2017) Zhi-An Huang et al.   Frontiers in Microbiology

A novel approach based on KATZ measure to predict associations of human microbiota with non-infectious diseases

(2016) Xing Chen et al.   BIOINFORMATICS

Sequence-based prediction of protein-protein interactions using weighted sparse representation model combined with global encoding

(2016) Yu-An Huang et al.   BMC BIOINFORMATICS

Long non-coding RNAs and complex diseases: from experimental results to computational models

(2016) Xing Chen et al.   BRIEFINGS IN BIOINFORMATICS

miREFRWR: a novel disease-related microRNA-environmental factor interactions prediction method

(2016) Xing Chen   Molecular BioSystems

ILNCSIM: improved lncRNA functional similarity calculation model

(2016) Yu-An Huang et al.   Oncotarget

FMLNCSIM: fuzzy measure-based lncRNA functional similarity calculation model

(2016) Xing Chen et al.   Oncotarget

HGIMDA: Heterogeneous graph inference for miRNA-disease association prediction

(2016) Xing Chen et al.   Oncotarget

IRWRLDA: improved random walk with restart for lncRNA-disease association prediction

(2016) Xing Chen et al.   Oncotarget

NLLSS: Predicting Synergistic Drug Combinations Based on Semi-supervised Learning

(2016) Xing Chen et al.   PLoS Computational Biology

Identification and Construction of Combinatory Cancer Hallmark–Based Gene Signature Sets to Predict Recurrence and Chemotherapy Benefit in Stage II Colorectal Cancer

(2016) Shanwu Gao et al.   JAMA Oncology

WBSMDA: Within and Between Score for MiRNA-Disease Association prediction

(2016) Xing Chen et al.   Scientific Reports

Prediction of potential disease-associated microRNAs based on random walk

(2015) Ping Xuan et al.   BIOINFORMATICS

Drug–target interaction prediction: databases, web servers and computational models

(2015) Xing Chen et al.   BRIEFINGS IN BIOINFORMATICS

Detection of Interactions between Proteins through Rotation Forest and Local Phase Quantization Descriptors

(2015) Leon Wong et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Predictive genomics: A cancer hallmark network framework for predicting tumor clinical phenotypes using genome sequencing data

(2015) Edwin Wang et al.   SEMINARS IN CANCER BIOLOGY

RBMMMDA: predicting multiple types of disease-microRNA associations

(2015) Xing Chen et al.   Scientific Reports

Constructing lncRNA functional similarity network based on lncRNA-disease associations and disease semantic similarity

(2015) Xing Chen et al.   Scientific Reports

Circulating Exosomal microRNAs as Biomarkers of Colon Cancer

(2014) Hiroko Ogata-Kawata et al.   PLoS One

Semi-supervised learning for potential human microRNA-disease associations inference

(2014) Xing Chen et al.   Scientific Reports

Protein-driven inference of miRNA-disease associations

(2013) S. Mork et al.   BIOINFORMATICS

Novel human lncRNA–disease association inference based on lncRNA expression profiles

(2013) Xing Chen et al.   BIOINFORMATICS

Using context-specific effect of miRNAs to identify functional associations between miRNAs and gene signatures

(2013) Mohammed Alshalalfa et al.   BMC BIOINFORMATICS

Walking the interactome to identify human miRNA-disease associations through the functional link between miRNA targets and disease genes

(2013) Hongbo Shi et al.   BMC Systems Biology

microRNA-183 is an oncogene targeting Dkk-3 and SMAD4 in prostate cancer

(2013) K Ueno et al.   BRITISH JOURNAL OF CANCER

HMDD v2.0: a database for experimentally supported human microRNA and disease associations

(2013) Yang Li et al.   NUCLEIC ACIDS RESEARCH

Regulation of several androgen-induced genes through the repression of the miR-99a/let-7c/miR-125b-2 miRNA cluster in prostate cancer cells

(2013) D Sun et al.   ONCOGENE

Prediction of microRNAs Associated with Human Diseases Based on Weighted k Most Similar Neighbors

(2013) Ping Xuan et al.   PLoS One

Cancer systems biology in the genome sequencing era: Part 1, dissecting and modeling of tumor clones and their networks

(2013) Edwin Wang et al.   SEMINARS IN CANCER BIOLOGY

Cancer systems biology in the genome sequencing era: Part 2, evolutionary dynamics of tumor clonal networks and drug resistance

(2013) Edwin Wang et al.   SEMINARS IN CANCER BIOLOGY

MicroRNA Expression Profiling of Esophageal Cancer Before and After Induction Chemoradiotherapy

(2012) Michael Augustine Ko et al.   ANNALS OF THORACIC SURGERY

microRNA-21-mediated regulation of Sprouty2 protein expression enhances the cytotoxic effect of 5-fluorouracil and metformin in colon cancer cells

(2012) Chao-Jung Tsao   INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE

Circulating MicroRNA in inflammatory bowel disease

(2012) Archanioti Paraskevi et al.   Journal of Crohns & Colitis

RWRMDA: predicting novel human microRNA–disease associations

(2012) Xing Chen et al.   Molecular BioSystems

Prediction of Disease-Related Interactions between MicroRNAs and Environmental Factors Based on a Semi-Supervised Classifier

(2012) Xing Chen et al.   PLoS One

Reduced Circulating miR-15b Is Correlated with Phosphate Metabolism in Patients with End-Stage Renal Disease on Maintenance Hemodialysis

(2012) Honglei Wang et al.   RENAL FAILURE

Gaussian interaction profile kernels for predicting drug–target interaction

(2011) Twan van Laarhoven et al.   BIOINFORMATICS

Global cancer statistics

(2011) Ahmedin Jemal et al.   CA-A CANCER JOURNAL FOR CLINICIANS

MicroRNA-21 induces stemness by downregulating transforming growth factor beta receptor 2 (TGF R2) in colon cancer cells

(2011) Y. Yu et al.   CARCINOGENESIS

Overexpression of miR-200c Induces Chemoresistance in Esophageal Cancers Mediated Through Activation of the Akt Signaling Pathway

(2011) R. Hamano et al.   CLINICAL CANCER RESEARCH

Mir-148a Improves Response to Chemotherapy in Sensitive and Resistant Oesophageal Adenocarcinoma and Squamous Cell Carcinoma Cells

(2011) Richard Hummel et al.   JOURNAL OF GASTROINTESTINAL SURGERY

Prioritizing Candidate Disease miRNAs by Topological Features in the miRNA Target-Dysregulated Network: Case Study of Prostate Cancer

(2011) J. Xu et al.   MOLECULAR CANCER THERAPEUTICS

Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases

(2010) Dong Wang et al.   BIOINFORMATICS

dbDEMC: a database of differentially expressed miRNAs in human cancers

(2010) Zhen Yang et al.   BMC GENOMICS

Prioritization of disease microRNAs through a human phenome-microRNAome network

(2010) Qinghua Jiang et al.   BMC Systems Biology

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

MicroRNA Expression in Squamous Cell Carcinoma and Adenocarcinoma of the Esophagus: Associations with Survival

(2009) E. A. Mathe et al.   CLINICAL CANCER RESEARCH

Cutting-plane training of structural SVMs

(2009) Thorsten Joachims et al.   MACHINE LEARNING

Ectopic expression of miR-126*, an intronic product of the vascular endothelial EGF-like 7 gene, regulates prostein translation and invasiveness of prostate cancer LNCaP cells

(2008) Alla Musiyenko et al.   JOURNAL OF MOLECULAR MEDICINE-JMM

miR2Disease: a manually curated database for microRNA deregulation in human disease

(2008) Q. Jiang et al.   NUCLEIC ACIDS RESEARCH