Entomopathogenic nematode-associated microbiota: from monoxenic paradigm to pathobiome

Bridging the Holistic-Reductionist Divide in Microbial Ecology

(2019) Robin Tecon et al.   mSystems

The tripartite interactions between the mosquito, its microbiota and Plasmodium

(2018) Ottavia Romoli et al.   Parasites & Vectors

Microbiome Structure Influences Infection by the Parasite Crithidia bombi in Bumble Bees

(2018) Blair K. Mockler et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Helminth Microbiomes – A Hidden Treasure Trove?

(2018) T.P. Jenkins et al.   TRENDS IN PARASITOLOGY

Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny

(2018) F. Joseph Pollock et al.   Nature Communications

Variable virulence phenotype of Xenorhabdus bovienii (γ-Proteobacteria: Enterobacteriaceae) in the absence of their vector hosts

(2017) John G McMullen et al.   MICROBIOLOGY-SGM

Microbial Partnerships of Pathogenic Oomycetes

(2017) Marie Larousse et al.   PLoS Pathogens

Tomato root microbiota and Phytophthora parasitica-associated disease

(2017) Marie Larousse et al.   Microbiome

Deciphering composition and function of the root microbiome of a legume plant

(2017) Kyle Hartman et al.   Microbiome

Death Becomes Them: Bacterial Community Dynamics and Stilbene Antibiotic Production in Cadavers of Galleria mellonella Killed by Heterorhabditis and Photorhabdus spp.

(2016) Amanda C. Wollenberg et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The native microbiome of the nematode Caenorhabditis elegans: gateway to a new host-microbiome model

(2016) Philipp Dirksen et al.   BMC BIOLOGY

A look into the toolbox of multi-talents: insect pathogenicity determinants of plant-beneficial pseudomonads

(2016) Christoph Keel   ENVIRONMENTAL MICROBIOLOGY

The mouse gut microbiome revisited: From complex diversity to model ecosystems

(2016) Thomas Clavel et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Insect pathogenicity in plant-beneficial pseudomonads: phylogenetic distribution and comparative genomics

(2016) Pascale Flury et al.   ISME Journal

Assembly of the Caenorhabditis elegans gut microbiota from diverse soil microbial environments

(2016) Maureen Berg et al.   ISME Journal

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Midgut microbiota and host immunocompetence underlieBacillus thuringiensiskilling mechanism

(2016) Silvia Caccia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Early gut colonizers shape parasite susceptibility and microbiota composition in honey bee workers

(2016) Ryan S. Schwarz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dancing with the Stars: How Choreographed Bacterial Interactions Dictate Nososymbiocity and Give Rise to Keystone Pathogens, Accessory Pathogens, and Pathobionts

(2016) George Hajishengallis et al.   TRENDS IN MICROBIOLOGY

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Multiorganismal Insects: Diversity and Function of Resident Microorganisms

(2015) Angela E. Douglas   Annual Review of Entomology

Xenorhabdus bovienii CS03, the bacterial symbiont of the entomopathogenic nematode Steinernema weiseri, is a non-virulent strain against lepidopteran insects

(2015) Gaëlle Bisch et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

High-Throughput Metagenomic Technologies for Complex Microbial Community Analysis: Open and Closed Formats

(2015) Jizhong Zhou et al.   mBio

Where Next for Microbiome Research?

(2015) Matthew K. Waldor et al.   PLOS BIOLOGY

Studying host-microbiota mutualism in Drosophila: Harnessing the power of gnotobiotic flies

(2015) Dali Ma et al.   Biomedical Journal

Role of Secondary Metabolites in Establishment of the Mutualistic Partnership between Xenorhabdus nematophila and the Entomopathogenic Nematode Steinernema carpocapsae

(2014) Swati Singh et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial Population Dynamics in the Hemolymph of Manduca sexta Infected with Xenorhabdus nematophila and the Entomopathogenic Nematode Steinernema carpocapsae

(2014) Swati Singh et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Attenuated Virulence and Genomic Reductive Evolution in the Entomopathogenic Bacterial Symbiont Species, Xenorhabdus poinarii

(2014) Jean-Claude Ogier et al.   Genome Biology and Evolution

Wolbachia endosymbionts and human disease control

(2014) Barton E. Slatko et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Shifting the paradigm from pathogens to pathobiome: new concepts in the light of meta-omics

(2014) Muriel Vayssier-Taussat et al.   Frontiers in Cellular and Infection Microbiology

Swarm: robust and fast clustering method for amplicon-based studies

(2014) Frédéric Mahé et al.   PeerJ

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

The Hologenomic Basis of Speciation: Gut Bacteria Cause Hybrid Lethality in the Genus Nasonia

(2013) R. M. Brucker et al.   SCIENCE

How the insect pathogen bacteria Bacillus thuringiensis and Xenorhabdus/Photorhabdus occupy their hosts

(2012) Christina Nielsen-LeRoux et al.   CURRENT OPINION IN MICROBIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Native Microbiota Shape Insect Vector Competence for Human Pathogens

(2011) Chris M. Cirimotich et al.   Cell Host & Microbe

Phenotypic variation and host interactions of Xenorhabdus bovienii SS-2004, the entomopathogenic symbiont of Steinernema jollieti nematodes

(2011) Darby R. Sugar et al.   ENVIRONMENTAL MICROBIOLOGY

A complex journey: transmission of microbial symbionts

(2010) Monika Bright et al.   NATURE REVIEWS MICROBIOLOGY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Masters of conquest and pillage:Xenorhabdus nematophilaglobal regulators control transitions from virulence to nutrient acquisition

(2009) Gregory R. Richards et al.   CELLULAR MICROBIOLOGY

Phylogeny of Photorhabdus and Xenorhabdus based on universally conserved protein-coding sequences and implications for the taxonomy of these two genera. Proposal of new taxa: X. vietnamensis sp. nov., P. luminescens subsp. caribbeanensis subsp. nov., P. luminescens subsp. hainanensis subsp. nov., P. temperata subsp. khanii subsp. nov., P. temperata subsp. tasmaniensis subsp. nov., and the reclassification of P. luminescens subsp. thracensis as P. temperata subsp. thracensis comb. nov.

(2009) P. Tailliez et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Isolation of naturally associated bacteria of necromenic Pristionchus nematodes and fitness consequences

(2008) R. Rae et al.   JOURNAL OF EXPERIMENTAL BIOLOGY