Coral microbiome composition along the northern Red Sea suggests high plasticity of bacterial and specificity of endosymbiotic dinoflagellate communities

Coral microbiome diversity reflects mass coral bleaching susceptibility during the 2016 El Niño heat wave

(2019) Stephanie G. Gardner et al.   Ecology and Evolution

SymPortal: a novel analytical framework and platform for coral algal symbiont next-generation sequencing ITS2 profiling

(2019) B. C. C. Hume et al.   Molecular Ecology Resources

Coral bacterial community structure responds to environmental change in a host-specific manner

(2019) Maren Ziegler et al.   Nature Communications

High levels of floridoside at high salinity link osmoadaptation with bleaching susceptibility in the cnidarian-algal endosymbiosis

(2019) Hagen M. Gegner et al.   Biology Open

Coral physiology and microbiome dynamics under combined warming and ocean acidification

(2018) Andréa G. Grottoli et al.   PLoS One

Spatial and temporal patterns of mass bleaching of corals in the Anthropocene

(2018) Terry P. Hughes et al.   SCIENCE

Metaorganisms in extreme environments: do microbes play a role in organismal adaptation?

(2018) Corinna Bang et al.   ZOOLOGY

Using Aiptasia as a Model to Study Metabolic Interactions in Cnidarian-Symbiodinium Symbioses

(2018) Nils Rädecker et al.   Frontiers in Physiology

Systematic Revision of Symbiodiniaceae Highlights the Antiquity and Diversity of Coral Endosymbionts

(2018) Todd C. LaJeunesse et al.   CURRENT BIOLOGY

Carbohydrate composition of mucus from scleractinian corals from the central Red Sea

(2018) G. Hadaidi et al.   CORAL REEFS

Marine probiotics: increasing coral resistance to bleaching through microbiome manipulation

(2018) Phillipe M. Rosado et al.   ISME Journal

Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny

(2018) F. Joseph Pollock et al.   Nature Communications

Thermal refugia against coral bleaching throughout the northern Red Sea

(2017) Eslam O. Osman et al.   GLOBAL CHANGE BIOLOGY

Rapid thermal adaptation in photosymbionts of reef-building corals

(2017) Leela J. Chakravarti et al.   GLOBAL CHANGE BIOLOGY

Host specificity of Symbiodinium variants revealed by an ITS2 metahaplotype approach

(2017) Edward G Smith et al.   ISME Journal

Biogeography and molecular diversity of coral symbionts in the genus Symbiodinium around the Arabian Peninsula

(2017) Maren Ziegler et al.   JOURNAL OF BIOGEOGRAPHY

Symbiodinium (Dinophyceae) community patterns in invertebrate hosts from inshore marginal reefs of the southern Great Barrier Reef, Australia

(2017) Linda Tonk et al.   JOURNAL OF PHYCOLOGY

Population genetics of reef coral endosymbionts (Symbiodinium , Dinophyceae)

(2017) D. J. Thornhill et al.   MOLECULAR ECOLOGY

Global warming and recurrent mass bleaching of corals

(2017) Terry P. Hughes et al.   NATURE

MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data

(2017) Achal Dhariwal et al.   NUCLEIC ACIDS RESEARCH

Symbiotic Dinoflagellate Functional Diversity Mediates Coral Survival under Ecological Crisis

(2017) David J. Suggett et al.   TRENDS IN ECOLOGY & EVOLUTION

Bacterial community dynamics are linked to patterns of coral heat tolerance

(2017) Maren Ziegler et al.   Nature Communications

Rapid adaptive responses to climate change in corals

(2017) Gergely Torda et al.   Nature Climate Change

Stable mucus-associated bacterial communities in bleached and healthy corals of Porites lobata from the Arabian Seas

(2017) Ghaida Hadaidi et al.   Scientific Reports

Microbial community composition of deep-sea corals from the Red Sea provides insight into functional adaption to a unique environment

(2017) Till Röthig et al.   Scientific Reports

Broadcast Spawning Coral Mussismilia hispida Can Vertically Transfer its Associated Bacterial Core

(2017) Deborah C. A. Leite et al.   Frontiers in Microbiology

High salinity conveys thermotolerance in the coral model Aiptasia

(2017) Hagen M. Gegner et al.   Biology Open

Normalization and microbial differential abundance strategies depend upon data characteristics

(2017) Sophie Weiss et al.   Microbiome

Intraspecific differences in molecular stress responses and coral pathobiome contribute to mortality under bacterial challenge in Acropora millepora

(2017) Rachel M. Wright et al.   Scientific Reports

Reef-building corals thrive within hot-acidified and deoxygenated waters

(2017) Emma F. Camp et al.   Scientific Reports

Diversity and function of prevalent symbiotic marine bacteria in the genus Endozoicomonas

(2016) Matthew J. Neave et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Contrasting physiological plasticity in response to environmental stress within different cnidarians and their respective symbionts

(2016) Kenneth D. Hoadley et al.   CORAL REEFS

Differential specificity between closely related corals and abundant Endozoicomonas endosymbionts across global scales

(2016) Matthew J Neave et al.   ISME Journal

Exploring the Symbiodinium rare biosphere provides evidence for symbiont switching in reef-building corals

(2016) Nadine M Boulotte et al.   ISME Journal

Coral microbial community dynamics in response to anthropogenic impacts near a major city in the central Red Sea

(2016) Maren Ziegler et al.   MARINE POLLUTION BULLETIN

Sex, Scavengers, and Chaperones: Transcriptome Secrets of Divergent Symbiodinium Thermal Tolerances

(2016) Rachel A. Levin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Long-term salinity tolerance is accompanied by major restructuring of the coral bacterial microbiome

(2016) Till Röthig et al.   MOLECULAR ECOLOGY

Ancestral genetic diversity associated with the rapid spread of stress-tolerant coral symbionts in response to Holocene climate change

(2016) Benjamin C. C. Hume et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Symbiodiniumbiogeography tracks environmental patterns rather than host genetics in a key Caribbean reef-builder,Orbicella annularis

(2016) Emma V. Kennedy et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Acclimatization to high-variance habitats does not enhance physiological tolerance of two key Caribbean corals to future temperature and pH

(2016) Emma F. Camp et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Dimethylsulfoniopropionate, superoxide dismutase and glutathione as stress response indicators in three corals under short-term hyposalinity stress

(2016) Stephanie G. Gardner et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Overfishing and nutrient pollution interact with temperature to disrupt coral reefs down to microbial scales

(2016) Jesse R. Zaneveld et al.   Nature Communications

Species-specific control of external superoxide levels by the coral holobiont during a natural bleaching event

(2016) Julia M. Diaz et al.   Nature Communications

Mucus Sugar Content Shapes the Bacterial Community Structure in Thermally Stressed Acropora muricata

(2016) Sonny T. M. Lee et al.   Frontiers in Microbiology

Host-associated coral reef microbes respond to the cumulative pressures of ocean warming and ocean acidification

(2016) N. S. Webster et al.   Scientific Reports

Air exposure of coral is a significant source of dimethylsulfide (DMS) to the atmosphere

(2016) Frances E. Hopkins et al.   Scientific Reports

Recent origin and semi-permeable species boundaries in the scleractinian coral genus Stylophora from the Red Sea

(2016) Roberto Arrigoni et al.   Scientific Reports

The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts

(2015) Tracy D Ainsworth et al.   ISME Journal

Genomic determinants of coral heat tolerance across latitudes

(2015) G. B. Dixon et al.   SCIENCE

Limits to the thermal tolerance of corals adapted to a highly fluctuating, naturally extreme temperature environment

(2015) Verena Schoepf et al.   Scientific Reports

Symbiodinium thermophilum sp. nov., a thermotolerant symbiotic alga prevalent in corals of the world's hottest sea, the Persian/Arabian Gulf

(2015) B. C. C. Hume et al.   Scientific Reports

Microbes in the coral holobiont: partners through evolution, development, and ecological interactions

(2015) Janelle R. Thompson et al.   Frontiers in Cellular and Infection Microbiology

Change in algal symbiont communities after bleaching, not prior heat exposure, increases heat tolerance of reef corals

(2014) Rachel N. Silverstein et al.   GLOBAL CHANGE BIOLOGY

Modulation of gut microbiota during probiotic-mediated attenuation of metabolic syndrome in high fat diet-fed mice

(2014) Jingjing Wang et al.   ISME Journal

Natural volcanic CO2 seeps reveal future trajectories for host–microbial associations in corals and sponges

(2014) Kathleen M Morrow et al.   ISME Journal

Symbiodinium(Dinophyceae) diversity in reef-invertebrates along an offshore to inshore reef gradient near Lizard Island, Great Barrier Reef

(2014) Linda Tonk et al.   JOURNAL OF PHYCOLOGY

AssessingSymbiodiniumdiversity in scleractinian corals via next-generation sequencing-based genotyping of the ITS2 rDNA region

(2014) Chatchanit Arif et al.   MOLECULAR ECOLOGY

Spatio-Temporal Analyses of Symbiodinium Physiology of the Coral Pocillopora verrucosa along Large-Scale Nutrient and Temperature Gradients in the Red Sea

(2014) Yvonne Sawall et al.   PLoS One

Mechanisms of reef coral resistance to future climate change

(2014) S. R. Palumbi et al.   SCIENCE

Potential Role of Carotenoids as Antioxidants in Human Health and Disease

(2014) Joanna Fiedor et al.   Nutrients

The engine of the reef: photobiology of the coral–algal symbiosis

(2014) Melissa S. Roth   Frontiers in Microbiology

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

BayesHammer: Bayesian clustering for error correction in single-cell sequencing

(2013) Sergey I Nikolenko et al.   BMC GENOMICS

HOST-SPECIALIST LINEAGES DOMINATE THE ADAPTIVE RADIATION OF REEF CORAL ENDOSYMBIONTS

(2013) Daniel J. Thornhill et al.   EVOLUTION

A coral reef refuge in the Red Sea

(2013) Maoz Fine et al.   GLOBAL CHANGE BIOLOGY

Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages

(2013) Craig E Nelson et al.   ISME Journal

MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment

(2013) Elizabeth M Glass et al.   ISME Journal

Coral reef invertebrate microbiomes correlate with the presence of photosymbionts

(2013) David G Bourne et al.   ISME Journal

DMSP biosynthesis by an animal and its role in coral thermal stress response

(2013) Jean-Baptiste Raina et al.   NATURE

In-situ Effects of Eutrophication and Overfishing on Physiology and Bacterial Diversity of the Red Sea Coral Acropora hemprichii

(2013) Christian Jessen et al.   PLoS One

Host-Specific Interactions with Environmental Factors Shape the Distribution of Symbiodinium across the Great Barrier Reef

(2013) Linda Tonk et al.   PLoS One

Bacterial communities and species-specific associations with the mucus of Brazilian coral species

(2013) Camila Carlos et al.   Scientific Reports

Nutrient cycling in early coral life stages:Pocillopora damicornislarvae provide their algal symbiont (Symbiodinium) with nitrogen acquired from bacterial associates

(2013) Janja Ceh et al.   Ecology and Evolution

Bacterial Associates of Two Caribbean Coral Species Reveal Species-Specific Distribution and Geographic Variability

(2012) Kathleen M. Morrow et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Spatial and Species Variations in Bacterial Communities Associated with Corals from the Red Sea as Revealed by Pyrosequencing

(2012) On On Lee et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Members of native coral microbiota inhibit glycosidases and thwart colonization of coral mucus by an opportunistic pathogen

(2012) Cory J Krediet et al.   ISME Journal

Long-term monitoring of algal symbiont communities in corals reveals stability is taxon dependent and driven by site-specific thermal regime

(2012) AC Baker et al.   MARINE ECOLOGY PROGRESS SERIES

Antibacterial Activity of Pseudoalteromonas in the Coral Holobiont

(2012) Maya Shnit-Orland et al.   MICROBIAL ECOLOGY

Cell Biology of Cnidarian-Dinoflagellate Symbiosis

(2012) S. K. Davy et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

METAGENassist: a comprehensive web server for comparative metagenomics

(2012) D. Arndt et al.   NUCLEIC ACIDS RESEARCH

Diversity and Distribution of Symbiodinium Associated with Seven Common Coral Species in the Chagos Archipelago, Central Indian Ocean

(2012) Sung-Yin Yang et al.   PLoS One

Photosynthetic characteristics of marine aerobic anoxygenic phototrophic bacteria Roseobacter and Erythrobacter strains

(2011) Yuki Sato-Takabe et al.   ARCHIVES OF MICROBIOLOGY

Do fluctuating temperature environments elevate coral thermal tolerance?

(2011) T. A. Oliver et al.   CORAL REEFS

Diversity and dynamics of bacterial communities in early life stages of the Caribbean coral Porites astreoides

(2011) Koty H Sharp et al.   ISME Journal

The nature and taxonomic composition of coral symbiomes as drivers of performance limits in scleractinian corals

(2011) Ruth D. Gates et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Symbiodinium diversity in mesophotic coral communities on the Great Barrier Reef: a first assessment

(2011) P Bongaerts et al.   MARINE ECOLOGY PROGRESS SERIES

Improved Resolution of Reef-Coral Endosymbiont (Symbiodinium) Species Diversity, Ecology, and Evolution through psbA Non-Coding Region Genotyping

(2011) Todd C. LaJeunesse et al.   PLoS One

Coral thermal tolerance shaped by local adaptation of photosymbionts

(2011) E. J. Howells et al.   Nature Climate Change

A new method for non-parametric multivariate analysis of variance

(2010) MARTI J. ANDERSON   AUSTRAL ECOLOGY

Preservation of corals in salt-saturated DMSO buffer is superior to ethanol for PCR experiments

(2010) M. R. Gaither et al.   CORAL REEFS

Bacterial assemblages differ between compartments within the coral holobiont

(2010) M. J. Sweet et al.   CORAL REEFS

Long-standing environmental conditions, geographic isolation and host-symbiont specificity influence the relative ecological dominance and genetic diversification of coral endosymbionts in the genusSymbiodinium

(2010) Todd C. LaJeunesse et al.   JOURNAL OF BIOGEOGRAPHY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Caribbean Corals in Crisis: Record Thermal Stress, Bleaching, and Mortality in 2005

(2010) C. Mark Eakin et al.   PLoS One

Coral-Associated Bacteria and Their Role in the Biogeochemical Cycling of Sulfur

(2009) J.-B. Raina et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

Coral mucus-associated bacteria: a possible first line of defense

(2009) Maya Shnit-Orland et al.   FEMS MICROBIOLOGY ECOLOGY

Quantification of algal endosymbionts (Symbiodinium) in coral tissue using real-time PCR

(2009) J. C. MIEOG et al.   Molecular Ecology Resources

Symbiont acquisition strategy drives host–symbiont associations in the southern Great Barrier Reef

(2008) M. Stat et al.   CORAL REEFS