Evidence for an ancient whole genome duplication in the cycad lineage
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Evidence for an ancient whole genome duplication in the cycad lineage
Authors
Keywords
Flowering plants, Gymnosperms, Paleogenetics, Transcriptome analysis, Seeds, Plant genomics, RNA extraction, RNA sequencing
Journal
PLoS One
Volume 12, Issue 9, Pages e0184454
Publisher
Public Library of Science (PLoS)
Online
2017-09-09
DOI
10.1371/journal.pone.0184454
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Single-Copy Genes as Molecular Markers for Phylogenomic Studies in Seed Plants
- (2017) Zhen Li et al. Genome Biology and Evolution
- Contrasting Rates of Molecular Evolution and Patterns of Selection among Gymnosperms and Flowering Plants
- (2017) Amanda R. De La Torre et al. MOLECULAR BIOLOGY AND EVOLUTION
- Revisiting ancestral polyploidy in plants
- (2017) Colin Ruprecht et al. Science Advances
- A high frequency of allopolyploid speciation in the gymnospermous genusEphedraand its possible association with some biological and ecological features
- (2016) Hui Wu et al. MOLECULAR ECOLOGY
- Origin and diversification of living cycads: a cautionary tale on the impact of the branching process prior in Bayesian molecular dating
- (2015) Fabien L Condamine et al. BMC EVOLUTIONARY BIOLOGY
- Horsetails Are Ancient Polyploids: Evidence fromEquisetum giganteum
- (2015) Kevin Vanneste et al. PLANT CELL
- Early genome duplications in conifers and other seed plants
- (2015) Z. Li et al. Science Advances
- From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes
- (2014) Brad R Ruhfel et al. BMC EVOLUTIONARY BIOLOGY
- Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous–Paleogene boundary
- (2014) Kevin Vanneste et al. GENOME RESEARCH
- Methods for studying polyploid diversification and the dead end hypothesis: a reply to Soltiset al. (2014)
- (2014) Itay Mayrose et al. NEW PHYTOLOGIST
- Tangled up in two: a burst of genome duplications at the end of the Cretaceous and the consequences for plant evolution
- (2014) Kevin Vanneste et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Phylotranscriptomic analysis of the origin and early diversification of land plants
- (2014) Norman J. Wickett et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Land plant evolutionary timeline: Gene effects are secondary to fossil constraints in relaxed clock estimation of age and substitution rates
- (2013) Susana Magallón et al. AMERICAN JOURNAL OF BOTANY
- Chloroplast Phylogenomics Indicates that Ginkgo biloba Is Sister to Cycads
- (2013) Chung-Shien Wu et al. Genome Biology and Evolution
- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
- Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels
- (2012) Marcel H. Schulz et al. BIOINFORMATICS
- Rarely successful polyploids and their legacy in plant genomes
- (2012) Nils Arrigo et al. CURRENT OPINION IN PLANT BIOLOGY
- Polyploidy and its effect on evolutionary success: old questions revisited with new tools
- (2012) A Madlung HEREDITY
- Inference of Genome Duplications from Age Distributions Revisited
- (2012) Kevin Vanneste et al. MOLECULAR BIOLOGY AND EVOLUTION
- Ancestral polyploidy in seed plants and angiosperms
- (2011) Yuannian Jiao et al. NATURE
- Cenozoic extinctions account for the low diversity of extant gymnosperms compared with angiosperms
- (2011) Michael D. Crisp et al. NEW PHYTOLOGIST
- Recent Synchronous Radiation of a Living Fossil
- (2011) N. S. Nagalingum et al. SCIENCE
- Recently Formed Polyploid Plants Diversify at Lower Rates
- (2011) I. Mayrose et al. SCIENCE
- A Functional Phylogenomic View of the Seed Plants
- (2011) Ernest K. Lee et al. PLoS Genetics
- New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
- (2010) Stéphane Guindon et al. SYSTEMATIC BIOLOGY
- Polyploidy and angiosperm diversification
- (2009) Douglas E. Soltis et al. AMERICAN JOURNAL OF BOTANY
- The Impact of Outgroup Choice and Missing Data on Major Seed Plant Phylogenetics Using Genome-Wide EST Data
- (2009) Jose Eduardo de la Torre-Bárcena et al. PLoS One
- Origin and Early Evolution of Angiosperms
- (2008) Douglas E. Soltis et al. Annals of the New York Academy of Sciences
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started