Meta-Analysis of in vitro-Differentiated Macrophages Identifies Transcriptomic Signatures That Classify Disease Macrophages in vivo
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Title
Meta-Analysis of in vitro-Differentiated Macrophages Identifies Transcriptomic Signatures That Classify Disease Macrophages in vivo
Authors
Keywords
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Journal
Frontiers in Immunology
Volume 10, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2019-12-11
DOI
10.3389/fimmu.2019.02887
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Note: Only part of the references are listed.- Metascape provides a biologist-oriented resource for the analysis of systems-level datasets
- (2019) Yingyao Zhou et al. Nature Communications
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- Interferon-γ Represses M2 Gene Expression in Human Macrophages by Disassembling Enhancers Bound by the Transcription Factor MAF
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- (2017) Roksana M Pirzgalska et al. NATURE MEDICINE
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- (2017) Ewa Surdziel et al. PLoS One
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- (2017) Jialin Li et al. Nature Communications
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- (2017) Rachel Byng-Maddick et al. Frontiers in Immunology
- Environment Tunes Propagation of Cell-to-Cell Variation in the Human Macrophage Gene Network
- (2017) Andrew J. Martins et al. Cell Systems
- MultiQC: summarize analysis results for multiple tools and samples in a single report
- (2016) Philip Ewels et al. BIOINFORMATICS
- CD74-Downregulation of Placental Macrophage-Trophoblastic Interactions in PreeclampsiaNovelty and Significance
- (2016) Lukasz Przybyl et al. CIRCULATION RESEARCH
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- (2016) Daniel Eriksson Hogling et al. JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM
- Imatinib Triggers Phagolysosome Acidification and Antimicrobial Activity againstMycobacterium bovisBacille Calmette–Guérin in Glucocorticoid-Treated Human Macrophages
- (2016) Julia Steiger et al. JOURNAL OF IMMUNOLOGY
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- (2016) Anna-Maria Georgoudaki et al. Cell Reports
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- Functional Analysis and Transcriptomic Profiling of iPSC-Derived Macrophages and Their Application in Modeling Mendelian Disease
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- Distinct endotypes of steroid-resistant asthma characterized by IL-17Ahigh and IFN-γhigh immunophenotypes: Potential benefits of calcitriol
- (2015) Emma S. Chambers et al. JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY
- Enhancer Turnover Is Associated with a Divergent Transcriptional Response to Glucocorticoid in Mouse and Human Macrophages
- (2015) Alasdair W. Jubb et al. JOURNAL OF IMMUNOLOGY
- Robust enumeration of cell subsets from tissue expression profiles
- (2015) Aaron M Newman et al. NATURE METHODS
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- (2015) Matthew E. Ritchie et al. NUCLEIC ACIDS RESEARCH
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- T Cell–Derived IL-22 Amplifies IL-1β–Driven Inflammation in Human Adipose Tissue: Relevance to Obesity and Type 2 Diabetes
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- (2014) Jia Xue et al. IMMUNITY
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- (2014) S. Chandriani et al. JOURNAL OF IMMUNOLOGY
- ArrayExpress update—simplifying data submissions
- (2014) Nikolay Kolesnikov et al. NUCLEIC ACIDS RESEARCH
- Overexpression of CCN3 Inhibits Inflammation and Progression of Atherosclerosis in Apolipoprotein E-Deficient Mice
- (2014) Jun Liu et al. PLoS One
- The liver X receptor pathway is highly upregulated in rheumatoid arthritis synovial macrophages and potentiates TLR-driven cytokine release
- (2013) Darren Lee Asquith et al. ANNALS OF THE RHEUMATIC DISEASES
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- (2013) Andreas Krämer et al. BIOINFORMATICS
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- (2013) Thomas A. Wynn et al. NATURE
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- (2013) S. You et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- NCBI GEO: archive for functional genomics data sets—update
- (2012) Tanya Barrett et al. NUCLEIC ACIDS RESEARCH
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- (2012) K. Schroder et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Adipose tissue macrophages: phenotypic plasticity and diversity in lean and obese states
- (2011) David L Morris et al. CURRENT OPINION IN CLINICAL NUTRITION AND METABOLIC CARE
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- (2010) Benilton S. Carvalho et al. BIOINFORMATICS
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