Comparative Genomics of Pediococcus pentosaceus Isolated From Different Niches Reveals Genetic Diversity in Carbohydrate Metabolism and Immune System

Probiotic Pediococcus pentosaceus GS4 shields brush border membrane and alleviate liver toxicity imposed by chronic cadmium exposure in Swiss albino mice

(2019) Vinay Dubey et al.   JOURNAL OF APPLIED MICROBIOLOGY

Survey on the CRISPR arrays in Lactobacillus helveticus genomes

(2019) E. Scaltriti et al.   LETTERS IN APPLIED MICROBIOLOGY

Carbohydrate metabolic systems present on genomic islands are lost and gained in Vibrio parahaemolyticus

(2019) Abish Regmi et al.   BMC MICROBIOLOGY

Non-thermal approach to Listeria monocytogenes inactivation in milk: The combined effect of high pressure, pediocin PA-1 and bacteriophage P100

(2019) Norton Komora et al.   FOOD MICROBIOLOGY

Gene-trait matching across the Bifidobacterium longum pan-genome reveals considerable diversity in carbohydrate catabolism among human infant strains

(2018) Silvia Arboleya et al.   BMC GENOMICS

Probiotic Potential of Pediococcus pentosaceus LJR1, a Bacteriocinogenic Strain Isolated from Rumen Liquor of Goat (Capra aegagrus hircus)

(2018) Gothandam Ladha et al.   FOOD BIOTECHNOLOGY

BAGEL4: a user-friendly web server to thoroughly mine RiPPs and bacteriocins

(2018) Auke J van Heel et al.   NUCLEIC ACIDS RESEARCH

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins

(2018) David Couvin et al.   NUCLEIC ACIDS RESEARCH

Comparative Genomics Reveals the Regulatory Complexity of Bifidobacterial Arabinose and Arabino-Oligosaccharide Utilization

(2018) Aleksandr A. Arzamasov et al.   Frontiers in Microbiology

Antimicrobial activity of bacteriocin-like inhibitory substance produced by Pediococcus pentosaceus: from shake flasks to bioreactor

(2018) Pamela Oliveira de Souza de Azevedo et al.   MOLECULAR BIOLOGY REPORTS

Comparative genomic analysis of Lactobacillus mucosae LM1 identifies potential niche-specific genes and pathways for gastrointestinal adaptation

(2017) Valerie Diane V. Valeriano et al.   GENOMICS

Functional Studies of β-Glucosidases of Cytophaga hutchinsonii and Their Effects on Cellulose Degradation

(2017) Xinfeng Bai et al.   Frontiers in Microbiology

Exopolysaccharide fraction fromPediococcus pentosaceusKFT18 induces immunostimulatory activity in macrophages and immunosuppressed mice

(2016) J.-S. Shin et al.   JOURNAL OF APPLIED MICROBIOLOGY

Selection of a candidate probiotic strain ofPediococcus pentosaceusfrom the faecal microbiota of horses byin vitrotesting and health claims in a mouse model ofSalmonellainfection

(2016) B.C. Silva et al.   JOURNAL OF APPLIED MICROBIOLOGY

A Genomic View of Lactobacilli and Pediococci Demonstrates that Phylogeny Matches Ecology and Physiology

(2015) Jinshui Zheng et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effects of dietary inactivatedPediococcus pentosaceuson growth performance, feed utilization and blood characteristics of red sea bream,Pagrus majorjuvenile

(2015) M.A.O. Dawood et al.   AQUACULTURE NUTRITION

The Bacterial Phosphotransferase System: New Frontiers 50 Years after Its Discovery

(2015) Milton H. Saier Jr.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

An updated evolutionary classification of CRISPR–Cas systems

(2015) Kira S. Makarova et al.   NATURE REVIEWS MICROBIOLOGY

Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera

(2015) Zhihong Sun et al.   Nature Communications

Enhancement of 1-deoxynojirimycin content and α-glucosidase inhibitory activity in mulberry leaf using various fermenting microorganisms isolated from Korean traditional fermented food

(2015) Jong Hoon Jeong et al.   BIOTECHNOLOGY AND BIOPROCESS ENGINEERING

Cloning, expression and functional validation of a β-fructofuranosidase from Lactobacillus plantarum

(2014) Chen Chen et al.   PROCESS BIOCHEMISTRY

Whole-genome sequence assembly of Pediococcus pentosaceus LI05 (CGMCC 7049) from the human gastrointestinal tract and comparative analysis with representative sequences from three food-borne strains

(2014) Long-Xian Lv et al.   Gut Pathogens

Genotypic and phenotypic diversity of Pediococcus pentosaceus strains isolated from food matrices and characterisation of the penocin operon

(2013) Maria Elena Martino et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Structural Explanation for Allolactose (lacOperon Inducer) Synthesis bylacZβ-Galactosidase and the Evolutionary Relationship between Allolactose Synthesis and thelacRepressor

(2013) Robert W. Wheatley et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

DNA targeting specificity of RNA-guided Cas9 nucleases

(2013) Patrick D Hsu et al.   NATURE BIOTECHNOLOGY

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

CRISPRTarget

(2013) Ambarish Biswas et al.   RNA Biology

crRNA and tracrRNA guide Cas9-mediated DNA interference inStreptococcus thermophilus

(2013) Tautvydas Karvelis et al.   RNA Biology

Strong bias in the bacterial CRISPR elements that confer immunity to phage

(2013) David Paez-Espino et al.   Nature Communications

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Antimicrobial activity of pediocin PA-1 against Oenococcus oeni and other wine bacteria

(2012) Lorena Díez et al.   FOOD MICROBIOLOGY

Genome Sequence of Pediococcus pentosaceus Strain IE-3

(2012) S. Midha et al.   JOURNAL OF BACTERIOLOGY

Antioxidant activity and fatty acid profile of fermented milk prepared by Pediococcus pentosaceus

(2012) Gayathri Balakrishnan et al.   JOURNAL OF FOOD SCIENCE AND TECHNOLOGY-MYSORE

The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS): an interface between energy and signal transduction

(2012) Bernhard Erni   Journal of the Iranian Chemical Society

EvolView, an online tool for visualizing, annotating and managing phylogenetic trees

(2012) Huangkai Zhang et al.   NUCLEIC ACIDS RESEARCH

Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria

(2012) G. Gasiunas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

PGAP: pan-genomes analysis pipeline

(2011) Yongbing Zhao et al.   BIOINFORMATICS

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

Comparative Genomics of 28 Salmonella enterica Isolates: Evidence for CRISPR-Mediated Adaptive Sublineage Evolution

(2011) W. F. Fricke et al.   JOURNAL OF BACTERIOLOGY

Carbohydrate catabolic flexibility in the mammalian intestinal commensal Lactobacillus ruminis revealed by fermentation studies aligned to genome annotations

(2011) Michelle M O’ Donnell et al.   Microbial Cell Factories

The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coli

(2011) Rimantas Sapranauskas et al.   NUCLEIC ACIDS RESEARCH

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Reordering contigs of draft genomes using the Mauve Aligner

(2009) Anna I. Rissman et al.   BIOINFORMATICS

Transcriptional Regulation of the Cellobiose Operon of Streptococcus mutans

(2009) L. Zeng et al.   JOURNAL OF BACTERIOLOGY

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative analysis of CRISPR loci in lactic acid bacteria genomes

(2008) Philippe Horvath et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Characterization of pRS5: A theta-type plasmid found in a strain of Pediococcus pentosaceus isolated from wine that can be used to generate cloning vectors for lactic acid bacteria

(2008) M. Teresa Alegre et al.   PLASMID