Impact of Sample Preservation and Manipulation on Insect Gut Microbiome Profiling. A Test Case With Fruit Flies (Diptera, Tephritidae)

Instar- and host-associated differentiation of bacterial communities in the Mediterranean fruit fly Ceratitis capitata

(2018) Antonino Malacrinò et al.   PLoS One

The role of the gut microbiome in health and disease of adult honey bee workers

(2018) Kasie Raymann et al.   Current Opinion in Insect Science

Near full-length 16S rRNA gene next-generation sequencing revealed Asaia as a common midgut bacterium of wild and domesticated Queensland fruit fly larvae

(2018) Ania T. Deutscher et al.   Microbiome

The microbiota of marketed processed edible insects as revealed by high-throughput sequencing

(2017) Cristiana Garofalo et al.   FOOD MICROBIOLOGY

Gut symbiont enhances insecticide resistance in a significant pest, the oriental fruit fly Bactrocera dorsalis (Hendel)

(2017) Daifeng Cheng et al.   Microbiome

Why so many polyphagous fruit flies (Diptera: Tephritidae)? A further contribution to the ‘generalism’ debate

(2016) Anthony R Clarke   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Bacterial communities associated with invasive populations of Bactrocera dorsalis (Diptera: Tephritidae) in China

(2016) L.J. Liu et al.   BULLETIN OF ENTOMOLOGICAL RESEARCH

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Midgut Transcriptome of the Cockroach Periplaneta americana and Its Microbiota: Digestion, Detoxification and Oxidative Stress Response

(2016) Jianhua Zhang et al.   PLoS One

Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies

(2016) Se Jin Song et al.   mSystems

Collecting Fecal Samples for Microbiome Analyses in Epidemiology Studies

(2015) R. Sinha et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

Effect of preservation method on spider monkey (Ateles geoffroyi) fecal microbiota over 8weeks

(2015) Vanessa L. Hale et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Diversity of bacterial communities in the midgut ofBactrocera cucurbitae(Diptera: Tephritidae) populations and their potential use as attractants

(2015) Ashok B Hadapad et al.   PEST MANAGEMENT SCIENCE

Gut microbiota mediate caffeine detoxification in the primary insect pest of coffee

(2015) Javier A. Ceja-Navarro et al.   Nature Communications

Pyrosequencing reveals a shift in symbiotic bacteria populations across life stages of Bactrocera dorsalis

(2015) Awawing A. Andongma et al.   Scientific Reports

Evidence-based recommendations on storing and handling specimens for analyses of insect microbiota

(2015) Tobin J. Hammer et al.   PeerJ

Symbiotic bacteria enable olive fly larvae to overcome host defences

(2015) Michael Ben-Yosef et al.   Royal Society Open Science

Exploitation of the Medfly Gut Microbiota for the Enhancement of Sterile Insect Technique: Use of Enterobacter sp. in Larval Diet-Based Probiotic Applications

(2015) Antonios A. Augustinos et al.   PLoS One

Development of a Prokaryotic Universal Primer for Simultaneous Analysis of Bacteria and Archaea Using Next-Generation Sequencing

(2014) Shunsuke Takahashi et al.   PLoS One

A glimpse into past, present, and future DNA sequencing

(2013) Marcos Morey et al.   MOLECULAR GENETICS AND METABOLISM

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

Identification of cultivable bacteria in the intestinal tract ofBactrocera dorsalisfrom three different populations and determination of their attractive potential

(2013) Hongxiu Wang et al.   PEST MANAGEMENT SCIENCE

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Phylogenetic, Metabolic, and Taxonomic Diversities Shape Mediterranean Fruit Fly Microbiotas during Ontogeny

(2012) Yael Aharon et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Evaluation of different storage methods to characterize the fecal bacterial communities of captive western lowland gorillas (Gorilla gorilla gorilla)

(2012) Klára Vlčková et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Do diet and taxonomy influence insect gut bacterial communities?

(2012) D. R. Colman et al.   MOLECULAR ECOLOGY

Isolation and characterization of gut bacteria of fruit fly, Bactrocera tau (Walker)

(2012) Chandra S. Prabhakar et al.   PHYTOPARASITICA

Identifying Insects with Incomplete DNA Barcode Libraries, African Fruit Flies (Diptera: Tephritidae) as a Test Case

(2012) Massimiliano Virgilio et al.   PLoS One

Evaluation of Subsampling-Based Normalization Strategies for Tagged High-Throughput Sequencing Data Sets from Gut Microbiomes

(2011) Daniel Aguirre de Cárcer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Review of the past and present distribution of Mediterranean fruit fly (Ceratitis capitata Wiedemann) and Queensland fruit fly (Bactrocera tryoni Froggatt) in Australia

(2011) Bernard C Dominiak et al.   AUSTRALIAN JOURNAL OF ENTOMOLOGY

Low-diversity bacterial community in the gut of the fruitfly Drosophila melanogaster

(2011) Chun Nin Adam Wong et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterially enriched diet improves sexual performance of sterile male Mediterranean fruit flies

(2011) S. Gavriel et al.   JOURNAL OF APPLIED ENTOMOLOGY

Comparison of the diversity of the bacterial communities in the intestinal tract of adult Bactrocera dorsalis from three different populations

(2011) H. Wang et al.   JOURNAL OF APPLIED MICROBIOLOGY

Comparative pathology of bacteria in the genus Providencia to a natural host, Drosophila melanogaster

(2011) Madeline R. Galac et al.   MICROBES AND INFECTION

Gut microbiome-host interactions in health and disease

(2011) James M Kinross et al.   Genome Medicine

The Mediterranean fruit fly and its bacteria - potential for improving sterile insect technique operations

(2010) B. Yuval et al.   JOURNAL OF APPLIED ENTOMOLOGY

Alimentary Tract Bacteria Isolated and Identified with API-20E and Molecular Cloning Techniques from Australian Tropical Fruit Flies,Bactrocera cacuminataandB. tryoni

(2010) N. Thaochan et al.   JOURNAL OF INSECT SCIENCE

The NIH Human Microbiome Project

(2009) et al.   GENOME RESEARCH

Providencia sneebia sp. nov. and Providencia burhodogranariea sp. nov., isolated from wild Drosophila melanogaster

(2009) P. Juneja et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Manipulation of the microbiota of mass-reared Mediterranean fruit flies Ceratitis capitata (Diptera: Tephritidae) improves sterile male sexual performance

(2009) Eyal Ben Ami et al.   ISME Journal

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Gut bacterial communities in the Mediterranean fruit fly (Ceratitis capitata) and their impact on host longevity

(2008) A. Behar et al.   JOURNAL OF INSECT PHYSIOLOGY

Bringing back the fruit into fruit fly–bacteria interactions

(2008) A. BEHAR et al.   MOLECULAR ECOLOGY