Evidence for Co-evolutionary History of Early Diverging Lycopodiaceae Plants With Fungi

Metagenome Profiling Identifies Potential Biocontrol Agents for Selaginella kraussiana in New Zealand

(2019) Zhenhua Dang et al.   Genes

Fungal-Bacterial Networks in the Populus Rhizobiome Are Impacted by Soil Properties and Host Genotype

(2019) Gregory Bonito et al.   Frontiers in Microbiology

Functional complementarity of ancient plant‐fungal mutualisms: contrasting nitrogen, phosphorus and carbon exchanges between Mucoromycotina and Glomeromycotina fungal symbionts of liverworts

(2019) Katie J. Field et al.   NEW PHYTOLOGIST

Fungal endophytes of Populus trichocarpa alter host phenotype, gene expression and rhizobiome composition

(2019) Hui-Ling Liao et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Fern gametophytes of Angiopteris lygodiifolia and Osmunda japonica harbor diverse Mucoromycotina fungi

(2019) Yuki Ogura-Tsujita et al.   JOURNAL OF PLANT RESEARCH

Mucoromycotina fine root endophyte fungi form nutritional mutualisms with vascular plants

(2019) Grace Hoysted et al.   PLANT PHYSIOLOGY

RNA-based analyses reveal fungal communities structured by a senescence gradient in the moss Dicranum scoparium and the presence of putative multi-trophic fungi

(2018) Ko-Hsuan Chen et al.   NEW PHYTOLOGIST

The origin and evolution of mycorrhizal symbioses: from palaeomycology to phylogenomics

(2018) Christine Strullu-Derrien et al.   NEW PHYTOLOGIST

Phylogenomics of Endogonaceae and evolution of mycorrhizas within Mucoromycota

(2018) Ying Chang et al.   NEW PHYTOLOGIST

GenBank

(2018) Eric W Sayers et al.   NUCLEIC ACIDS RESEARCH

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

(2018) Rolf Henrik Nilsson et al.   NUCLEIC ACIDS RESEARCH

Ancient plants with ancient fungi: liverworts associate with early-diverging arbuscular mycorrhizal fungi

(2018) William R. Rimington et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Contemporaneous radiations of fungi and plants linked to symbiosis

(2018) François Lutzoni et al.   Nature Communications

Identifying the plant-associated microbiome across aquatic and terrestrial environments: the effects of amplification method on taxa discovery

(2017) Sara L. Jackrel et al.   Molecular Ecology Resources

How to know the fungi: combining field inventories and DNA-barcoding to document fungal diversity

(2017) Camille Truong et al.   NEW PHYTOLOGIST

Metacoder: An R package for visualization and manipulation of community taxonomic diversity data

(2017) Zachary S. L. Foster et al.   PLoS Computational Biology

Novel soil-inhabiting clades fill gaps in the fungal tree of life

(2017) Leho Tedersoo et al.   Microbiome

Multigene phylogeny of Endogonales, an early diverging lineage of fungi associated with plants

(2017) Alessandro Desirò et al.   IMA Fungus

A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data

(2016) Joseph W. Spatafora et al.   MYCOLOGIA

Phylogenetic relationships of New Zealand Lycopodiaceae

(2016) Delaney Burnard et al.   PLANT SYSTEMATICS AND EVOLUTION

iNEXT: an R package for rarefaction and extrapolation of species diversity (Hill numbers)

(2016) T. C. Hsieh et al.   Methods in Ecology and Evolution

Plant-endophyte symbiosis, an ecological perspective

(2015) Zahoor Ahmed Wani et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Error filtering, pair assembly and error correction for next-generation sequencing reads

(2015) Robert C. Edgar et al.   BIOINFORMATICS

dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering

(2015) Tal Galili   BIOINFORMATICS

Functional analysis of liverworts in dual symbiosis with Glomeromycota and Mucoromycotina fungi under a simulated Palaeozoic CO2 decline

(2015) Katie J Field et al.   ISME Journal

Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species

(2015) Devin Coleman-Derr et al.   NEW PHYTOLOGIST

GenBank

(2015) Karen Clark et al.   NUCLEIC ACIDS RESEARCH

Global assessment of arbuscular mycorrhizal fungus diversity reveals very low endemism

(2015) J. Davison et al.   SCIENCE

Symbiotic options for the conquest of land

(2015) Katie J. Field et al.   TRENDS IN ECOLOGY & EVOLUTION

Cultivation Techniques for Terrestrial Clubmosses (Lycopodiaceae): Conservation, Research, and Horticultural Opportunities for an Early-Diverging Plant Lineage

(2014) Jeffrey P. Benca   AMERICAN FERN JOURNAL

Evaluation of six primer pairs targeting the nuclear rRNA operon for characterization of arbuscular mycorrhizal fungal (AMF) communities using 454 pyrosequencing

(2014) Maarten Van Geel et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants

(2014) Gregory Bonito et al.   MOLECULAR ECOLOGY

Fungal associations of basal vascular plants: reopening a closed book?

(2014) William R. Rimington et al.   NEW PHYTOLOGIST

Endogone, one of the oldest plant-associated fungi, host unique Mollicutes-related endobacteria

(2014) Alessandro Desirò et al.   NEW PHYTOLOGIST

Reviving of the endophytic bacterial community as a putative mechanism of plant resistance

(2014) Olga Podolich et al.   PLANT AND SOIL

Morphological and molecular analyses of fungal endophytes of achlorophyllous gametophytes of Diphasiastrum alpinum (Lycopodiaceae)

(2013) Karsten Horn et al.   AMERICAN JOURNAL OF BOTANY

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

DNA-based detection and identification of Glomeromycota: the virtual taxonomy of environmental sequences

(2013) Maarja Öpik et al.   Botany

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Changes in Bacterial and Fungal Communities across Compost Recipes, Preparation Methods, and Composting Times

(2013) Deborah A. Neher et al.   PLoS One

A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees

(2013) Migun Shakya et al.   PLoS One

Fungal symbioses in hornworts: a chequered history

(2013) A. Desiro et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Comparison of commonly used primer sets for evaluating arbuscular mycorrhizal fungal communities: Is there a universal solution?

(2013) Petr Kohout et al.   SOIL BIOLOGY & BIOCHEMISTRY

Mycoheterotrophic interactions are not limited to a narrow phylogenetic range of arbuscular mycorrhizal fungi

(2012) VINCENT S. F. T. MERCKX et al.   MOLECULAR ECOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Plant symbionts: keys to the phytosphere

(2012) Teng Yang et al.   SYMBIOSIS

The dawn of symbiosis between plants and fungi

(2011) M. I. Bidartondo et al.   Biology Letters

The online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)

(2010) M. Öpik et al.   NEW PHYTOLOGIST

Mutualistic mycorrhiza-like symbiosis in the most ancient group of land plants

(2010) Claire P. Humphreys et al.   Nature Communications

Fungal fidelity in the myco-heterotroph-to-autotroph life cycle of Lycopodiaceae: a case of parental nurture?

(2009) Jonathan R. Leake et al.   NEW PHYTOLOGIST

Plant growth-promoting bacteria in the rhizo- and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization

(2009) Stéphane Compant et al.   SOIL BIOLOGY & BIOCHEMISTRY

Improved PCR primers for the detection and identification of arbuscular mycorrhizal fungi

(2008) Jaikoo Lee et al.   FEMS MICROBIOLOGY ECOLOGY

Molecular Community Analysis of Arbuscular Mycorrhizal Fungi in Roots of Geothermal Soils in Yellowstone National Park (USA)

(2008) Susann Appoloni et al.   MICROBIAL ECOLOGY

Plants and arbuscular mycorrhizal fungi: an evolutionary-developmental perspective

(2008) Paola Bonfante et al.   TRENDS IN PLANT SCIENCE

Arbuscular mycorrhizal associations in Lycopodiaceae

(2007) Jennifer L. Winther et al.   NEW PHYTOLOGIST