Machine learning with random subspace ensembles identifies antimicrobial resistance determinants from pan-genomes of three pathogens

Genetic basis of enzymatic resistance of E. coli to aminoglycosides

(2018) Dominika Ojdana et al.   Advances in Medical Sciences

Developing an in silico minimum inhibitory concentration panel test for Klebsiella pneumoniae

(2018) Marcus Nguyen et al.   Scientific Reports

A phylogenetic method to perform genome-wide association studies in microbes that accounts for population structure and recombination

(2018) Caitlin Collins et al.   PLoS Computational Biology

HflXr, a homolog of a ribosome-splitting factor, mediates antibiotic resistance

(2018) Mélodie Duval et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance

(2018) Erol S. Kavvas et al.   Nature Communications

WGS to predict antibiotic MICs for Neisseria gonorrhoeae

(2017) David W. Eyre et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Replication of Staphylococcal Resistance Plasmids

(2017) Stephen M. Kwong et al.   Frontiers in Microbiology

Whole-Genome Sequencing for Detecting Antimicrobial Resistance in Nontyphoidal Salmonella

(2016) Patrick F. McDermott et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Predictive computational phenotyping and biomarker discovery using reference-free genome comparisons

(2016) Alexandre Drouin et al.   BMC GENOMICS

The role of gyrA and parC mutations in fluoroquinolones-resistant Pseudomonas aeruginosa isolates from Iran

(2016) Roghayeh Nouri et al.   BRAZILIAN JOURNAL OF MICROBIOLOGY

Genomic Epidemiology of Gonococcal Resistance to Extended-Spectrum Cephalosporins, Macrolides, and Fluoroquinolones in the United States, 2000–2013

(2016) Yonatan H. Grad et al.   JOURNAL OF INFECTIOUS DISEASES

Microbial genome-wide association studies: lessons from human GWAS

(2016) Robert A. Power et al.   NATURE REVIEWS GENETICS

CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database

(2016) Baofeng Jia et al.   NUCLEIC ACIDS RESEARCH

Resistance fighters

(2016) K. Kupferschmidt   SCIENCE

Escherichia coli β-Lactamases: What Really Matters

(2016) Priyanka Bajaj et al.   Frontiers in Microbiology

Identifying lineage effects when controlling for population structure improves power in bacterial association studies

(2016) Sarah G. Earle et al.   Nature Microbiology

Antimicrobial Resistance Prediction in PATRIC and RAST

(2016) James J. Davis et al.   Scientific Reports

The advent of genome-wide association studies for bacteria

(2015) Peter E Chen et al.   CURRENT OPINION IN MICROBIOLOGY

Role of the Tet38 Efflux Pump in Staphylococcus aureus Internalization and Survival in Epithelial Cells

(2015) Q. C. Truong-Bolduc et al.   INFECTION AND IMMUNITY

Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis

(2015) Phelim Bradley et al.   Nature Communications

The ins and outs of RND efflux pumps in Escherichia coli

(2015) João Anes et al.   Frontiers in Microbiology

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

OXA  -Lactamases

(2014) B. A. Evans et al.   CLINICAL MICROBIOLOGY REVIEWS

Prediction of Staphylococcus aureus Antimicrobial Resistance by Whole-Genome Sequencing

(2014) N. C. Gordon et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Antibiotics induce redox-related physiological alterations as part of their lethality

(2014) D. J. Dwyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data

(2013) N. Stoesser et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

PATRIC, the bacterial bioinformatics database and analysis resource

(2013) Alice R. Wattam et al.   NUCLEIC ACIDS RESEARCH

Protein Aggregation Caused by Aminoglycoside Action Is Prevented by a Hydrogen Peroxide Scavenger

(2012) Jiqiang Ling et al.   MOLECULAR CELL

Aminoglycoside resistance in clinical Escherichia coli and Klebsiella pneumoniae isolates from Western Norway

(2011) PAUL CHRISTOFFER LINDEMANN et al.   APMIS

Mechanisms of Fluoroquinolone Resistance in Escherichia coli Isolates from Food-Producing Animals

(2011) Maria Karczmarczyk et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

LmrS Is a Multidrug Efflux Pump of the Major Facilitator Superfamily from Staphylococcus aureus

(2010) J. L. Floyd et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Efflux Pumps, OprD Porin, AmpC  -Lactamase, and Multiresistance in Pseudomonas aeruginosa Isolates from Cystic Fibrosis Patients

(2010) M. Tomas et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Aminoglycoside modifying enzymes

(2010) Maria S. Ramirez et al.   DRUG RESISTANCE UPDATES

DNA Damage Triggers Genetic Exchange in Helicobacter pylori

(2010) Marion S. Dorer et al.   PLoS Pathogens

Prevalence of trimethoprim resistance genes in Escherichia coli isolates of human and animal origin in Lithuania

(2009) V. Seputiene et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Gene cloning and characteristics of the RND-type multidrug efflux pump MuxABC-OpmB possessing two RND components in Pseudomonas aeruginosa

(2009) T. Mima et al.   MICROBIOLOGY-SGM

Aminoglycoside-Resistance Mechanisms in Multidrug-Resistant Staphylococcus aureus Clinical Isolates

(2008) R. Kelmani Chandrakanth et al.   CURRENT MICROBIOLOGY

Mechanism of action of and resistance to quinolones

(2008) Anna Fàbrega et al.   Microbial Biotechnology