Comparing Single-SNP, Multi-SNP, and Haplotype-Based Approaches in Association Studies for Major Traits in Barley

Natural variation and genetic make-up of leaf blade area in spring barley

(2018) Ahmad M. Alqudah et al.   THEORETICAL AND APPLIED GENETICS

Breeding Barley for Multiple Disease Resistance in the Upper MidwestRegion of the USA

(2018) B.J. Steffenson et al.   Czech Journal of Genetics and Plant Breeding

Genome-wide association studies on the phyllosphere microbiome: Embracing complexity in host-microbe interactions

(2018) Kathleen Beilsmith et al.   PLANT JOURNAL

Multi-Locus Genome-Wide Association Studies for 14 Main Agronomic Traits in Barley

(2018) Xin Hu et al.   Frontiers in Plant Science

pKWmEB: integration of Kruskal–Wallis test with empirical Bayes under polygenic background control for multi-locus genome-wide association study

(2017) Wen-Long Ren et al.   HEREDITY

pLARmEB: integration of least angle regression with empirical Bayes for multilocus genome-wide association studies

(2017) J Zhang et al.   HEREDITY

A barley UDP-glucosyltransferase inactivates nivalenol and provides Fusarium Head Blight resistance in transgenic wheat

(2017) Xin Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

A chromosome conformation capture ordered sequence of the barley genome

(2017) Martin Mascher et al.   NATURE

Genome-Wide Association Mapping of Stem Rust Resistance in Hordeum vulgare subsp. spontaneum

(2017) Ahmad H. Sallam et al.   G3-Genes Genomes Genetics

Multi-Locus Mixed Model Analysis Of Stem Rust Resistance In Winter Wheat

(2017) Paul D. Mihalyov et al.   Plant Genome

Iterative sure independence screening EM-Bayesian LASSO algorithm for multi-locus genome-wide association studies

(2017) Cox Lwaka Tamba et al.   PLoS Computational Biology

Genome-Wide Association Mapping Reveals the Genetic Control Underlying Branch Angle in Rapeseed (Brassica napus L.)

(2017) Hongge Li et al.   Frontiers in Plant Science

Genome-Wide Association Studies In Plant Pathosystems: Toward an Ecological Genomics Approach

(2017) Claudia Bartoli et al.   Frontiers in Plant Science

A Genome-Wide Association Study for Agronomic Traits in Soybean Using SNP Markers and SNP-Based Haplotype Analysis

(2017) Rodrigo Iván Contreras-Soto et al.   PLoS One

Genome-wide association mapping in winter barley for grain yield and culm cell wall polymer content using the high-throughput CoMPP technique

(2017) Andrea Bellucci et al.   PLoS One

Single Marker and Haplotype-Based Association Analysis of Semolina and Pasta Colour in Elite Durum Wheat Breeding Lines Using a High-Density Consensus Map

(2017) Amidou N’Diaye et al.   PLoS One

Whole genome sequencing-based association study to unravel genetic architecture of cooked grain width and length traits in rice

(2017) Gopal Misra et al.   Scientific Reports

QTL underlying some agronomic traits in barley detected by SNP markers

(2016) Jibin Wang et al.   BMC GENETICS

The Genetic Architecture of Barley Plant Stature

(2016) Ahmad M. Alqudah et al.   Frontiers in Genetics

Quantitative Trait Loci for Yield and Yield-Related Traits in Spring Barley Populations Derived from Crosses between European and Syrian Cultivars

(2016) Krzysztof Mikołajczak et al.   PLoS One

Genome-Wide Association Study for Traits Related to Plant and Grain Morphology, and Root Architecture in Temperate Rice Accessions

(2016) Filippo Biscarini et al.   PLoS One

Genome-wide Association Mapping of Fusarium Head Blight Resistance and Agromorphological Traits in Barley Landraces from Ethiopia and Eritrea

(2015) Bullo Erena Mamo et al.   CROP SCIENCE

BARLEYMAP: physical and genetic mapping of nucleotide sequences and annotation of surrounding loci in barley

(2015) Carlos P. Cantalapiedra et al.   MOLECULAR BREEDING

Genome-wide association studies in elite varieties of German winter barley using single-marker and haplotype-based methods

(2015) Inka Gawenda et al.   PLANT BREEDING

Analysis of main effect QTL for thousand grain weight in European winter wheat (Triticum aestivum L.) by genome-wide association mapping

(2015) Christine D. Zanke et al.   Frontiers in Plant Science

Association Mapping of Agronomic QTLs in U.S. Spring Barley Breeding Germplasm

(2015) Duke Pauli et al.   Plant Genome

Enrichment of statistical power for genome-wide association studies

(2014) Meng Li et al.   BMC BIOLOGY

The Genetic Architecture of Seed Composition in Soybean Is Refined by Genome-Wide Association Scans Across Multiple Populations

(2014) Justin N. Vaughn et al.   G3-Genes Genomes Genetics

Genome-wide association mapping of frost tolerance in barley (Hordeum vulgare L.)

(2013) Andrea Visioni et al.   BMC GENOMICS

Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ)

(2013) Martin Mascher et al.   PLANT JOURNAL

Demonstration of Genome-Wide Association Studies for Identifying Markers for Wood Property and Male Strobili Traits in Cryptomeria japonica

(2013) Kentaro Uchiyama et al.   PLoS One

GAPIT: genome association and prediction integrated tool

(2012) Alexander E. Lipka et al.   BIOINFORMATICS

Genome-wide association studies for agronomical traits in a world wide spring barley collection

(2012) Raj K Pasam et al.   BMC PLANT BIOLOGY

Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley

(2012) Jordi Comadran et al.   NATURE GENETICS

An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations

(2012) Vincent Segura et al.   NATURE GENETICS

Chapter 11: Genome-Wide Association Studies

(2012) William S. Bush et al.   PLoS Computational Biology

INTERMEDIUM-C, a modifier of lateral spikelet fertility in barley, is an ortholog of the maize domestication gene TEOSINTE BRANCHED 1

(2011) Luke Ramsay et al.   NATURE GENETICS

Functional characterisation of HvCO1, the barley (Hordeum vulgare) flowering time ortholog of CONSTANS

(2011) Chiara Campoli et al.   PLANT JOURNAL

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Comparative SNP and Haplotype Analysis Reveals a Higher Genetic Diversity and Rapider LD Decay in Tropical than Temperate Germplasm in Maize

(2011) Yanli Lu et al.   PLoS One

Mixed model association scans of multi-environmental trial data reveal major loci controlling yield and yield related traits in Hordeum vulgare in Mediterranean environments

(2011) J. Comadran et al.   THEORETICAL AND APPLIED GENETICS

Factors Affecting the Power of Haplotype Markers in Association Studies

(2011) Martha T. Hamblin et al.   Plant Genome

Genome-wide association mapping of Fusarium head blight resistance in contemporary barley breeding germplasm

(2010) J. Massman et al.   MOLECULAR BREEDING

Association mapping of spot blotch resistance in wild barley

(2010) Joy K. Roy et al.   MOLECULAR BREEDING

Mixed linear model approach adapted for genome-wide association studies

(2010) Zhiwu Zhang et al.   NATURE GENETICS

Variance component model to account for sample structure in genome-wide association studies

(2010) Hyun Min Kang et al.   NATURE GENETICS

Performance of Single Nucleotide Polymorphisms versus Haplotypes for Genome-Wide Association Analysis in Barley

(2010) Aaron J. Lorenz et al.   PLoS One

Genome-wide association mapping to candidate polymorphism resolution in the unsequenced barley genome

(2010) J. Cockram et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Estimating Effects and Making Predictions from Genome-Wide Marker Data

(2010) Michael E. Goddard et al.   STATISTICAL SCIENCE

Deoxynivalenol loads in matched pair wheat samples in Belgium: comparison of ELISA VERATOX kit against liquid chromatography

(2010) Emmanuel K. Tangni et al.   Mycotoxin Research

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Comparison of Mixed-Model Approaches for Association Mapping

(2008) B. Stich et al.   GENETICS