High-quality genome sequence of white lupin provides insight into soil exploration and seed quality

Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification

(2019) Pavel Neumann et al.   Mobile DNA

Reconstruction of ancestral genome reveals chromosome evolution history for selected legume species

(2019) Longhui Ren et al.   NEW PHYTOLOGIST

A reference genome for pea provides insight into legume genome evolution

(2019) Jonathan Kreplak et al.   NATURE GENETICS

Characterization of narrow-leaf lupin ( Lupinus angustifolius L.) recombinant major allergen IgE-binding proteins and the natural β-conglutin counterparts in sweet lupin seed species

(2018) Jose C. Jimenez-Lopez et al.   FOOD CHEMISTRY

The Rosa genome provides new insights into the domestication of modern roses

(2018) Olivier Raymond et al.   NATURE GENETICS

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

(2017) Robert M Waterhouse et al.   MOLECULAR BIOLOGY AND EVOLUTION

Hierarchically Aligning 10 Legume Genomes Establishes a Family-Level Genomics Platform

(2017) Jinpeng Wang et al.   PLANT PHYSIOLOGY

Proteins in Relation to Vigor and Viability of White Lupin (Lupinus albus L.) Seed Stored for 26 Years

(2017) Malwina Dobiesz et al.   Frontiers in Plant Science

A high-density consensus linkage map of white lupin highlights synteny with narrow-leafed lupin and provides markers tagging key agronomic traits

(2017) Michał Książkiewicz et al.   Scientific Reports

Assemblytics: a web analytics tool for the detection of variants from an assembly

(2016) Maria Nattestad et al.   BIOINFORMATICS

Reconstruction of a composite comparative map composed of ten legume genomes

(2016) Chaeyoung Lee et al.   Genes & Genomics

Phased diploid genome assembly with single-molecule real-time sequencing

(2016) Chen-Shan Chin et al.   NATURE METHODS

InterPro in 2017—beyond protein family and domain annotations

(2016) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant-microbe interactions and legume evolution

(2016) James K. Hane et al.   PLANT BIOTECHNOLOGY JOURNAL

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

OrthoVenn: a web server for genome wide comparison and annotation of orthologous clusters across multiple species

(2015) Yi Wang et al.   NUCLEIC ACIDS RESEARCH

Holocentromeres inRhynchosporaare associated with genome-wide centromere-specific repeat arrays interspersed among euchromatin

(2015) André Marques et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ALLMAPS: robust scaffold ordering based on multiple maps

(2015) Haibao Tang et al.   GENOME BIOLOGY

In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae

(2015) Jiří Macas et al.   PLoS One

An improved genome release (version Mt4.0) for the model legume Medicago truncatula

(2014) Haibao Tang et al.   BMC GENOMICS

Chemical composition of dehulled seeds of selected lupin cultivars in comparison to pea and soya bean

(2014) Melanie Bähr et al.   LWT-FOOD SCIENCE AND TECHNOLOGY

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

New evidence of ancestral polyploidy in the Genistoid legume Lupinus angustifolius L. (narrow-leafed lupin)

(2014) Magdalena Kroc et al.   THEORETICAL AND APPLIED GENETICS

How a phosphorus-acquisition strategy based on carboxylate exudation powers the success and agronomic potential of lupines (Lupinus , Fabaceae)

(2013) Hans Lambers et al.   AMERICAN JOURNAL OF BOTANY

RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads

(2013) P. Novak et al.   BIOINFORMATICS

It’s time to make changes: modulation of root system architecture by nutrient signals

(2013) Ricardo F. H. Giehl et al.   JOURNAL OF EXPERIMENTAL BOTANY

Spatio-Temporal Transcript Profiling of Rice Roots and Shoots in Response to Phosphate Starvation and Recovery

(2013) D. Secco et al.   PLANT CELL

The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency

(2012) Rico Gamuyao et al.   NATURE

Multiple Continental Radiations and Correlates of Diversification in Lupinus (Leguminosae): Testing for Key Innovation with Incomplete Taxon Sampling

(2012) Christopher S. Drummond et al.   SYSTEMATIC BIOLOGY

Legumes are valuable sources of tocopherols

(2011) Giovanna Boschin et al.   FOOD CHEMISTRY

Cholesterol-lowering effect of whole lupin (Lupinus albus) seed and its protein isolate

(2011) Gustavo Guadagnucci Fontanari et al.   FOOD CHEMISTRY

Root Phenes for Enhanced Soil Exploration and Phosphorus Acquisition: Tools for Future Crops

(2011) J. P. Lynch   PLANT PHYSIOLOGY

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The story of phosphorus: Global food security and food for thought

(2009) Dana Cordell et al.   GLOBAL ENVIRONMENTAL CHANGE-HUMAN AND POLICY DIMENSIONS

Uncovering Small RNA-Mediated Responses to Phosphate Deficiency in Arabidopsis by Deep Sequencing

(2009) L.-C. Hsieh et al.   PLANT PHYSIOLOGY

microRNA expression profiles associated with phosphorus deficiency in white lupin (Lupinus albus L.)

(2009) Yi Yong Zhu et al.   PLANT SCIENCE

Development of a sequence-specific PCR marker linked to the gene “pauper” conferring low-alkaloids in white lupin (Lupinus albus L.) for marker assisted selection

(2008) Ruiming Lin et al.   MOLECULAR BREEDING

Effect of genotype and environment on fatty acid composition of Lupinus albus L. seed

(2007) Giovanna Boschin et al.   FOOD CHEMISTRY