A computational platform for high-throughput analysis of RNA sequences and modifications by mass spectrometry
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
A computational platform for high-throughput analysis of RNA sequences and modifications by mass spectrometry
Authors
Keywords
-
Journal
Nature Communications
Volume 11, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-02-17
DOI
10.1038/s41467-020-14665-7
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Matching tRNA modifications in humans to their known and predicted enzymes
- (2019) Valérie de Crécy-Lagard et al. NUCLEIC ACIDS RESEARCH
- Reading canonical and modified nucleobases in 16S ribosomal RNA using nanopore native RNA sequencing
- (2019) Andrew M. Smith et al. PLoS One
- Modifications and functional genomics of human transfer RNA
- (2018) Tao Pan CELL RESEARCH
- Epitranscriptomic m 6 A Regulation of Axon Regeneration in the Adult Mammalian Nervous System
- (2018) Yi-Lan Weng et al. NEURON
- The SMAD2/3 interactome reveals that TGFβ controls m6A mRNA methylation in pluripotency
- (2018) Alessandro Bertero et al. NATURE
- Codon-specific translation reprogramming promotes resistance to targeted therapy
- (2018) Francesca Rapino et al. NATURE
- Landscape of the complete RNA chemical modifications in the human 80S ribosome
- (2018) Masato Taoka et al. NUCLEIC ACIDS RESEARCH
- Improved application of RNAModMapper – An RNA modification mapping software tool – For analysis of liquid chromatography tandem mass spectrometry (LC-MS/MS) data
- (2018) Peter A. Lobue et al. METHODS
- Targeted Feature Detection for Data-Dependent Shotgun Proteomics
- (2017) Hendrik Weisser et al. JOURNAL OF PROTEOME RESEARCH
- The m1A landscape on cytosolic and mitochondrial mRNA at single-base resolution
- (2017) Modi Safra et al. NATURE
- Epitranscriptome sequencing technologies: decoding RNA modifications
- (2017) Xiaoyu Li et al. NATURE METHODS
- Detecting RNA modifications in the epitranscriptome: predict and validate
- (2017) Mark Helm et al. NATURE REVIEWS GENETICS
- MODOMICS: a database of RNA modification pathways. 2017 update
- (2017) Pietro Boccaletto et al. NUCLEIC ACIDS RESEARCH
- Mass Spectrometry Applied to Bottom-Up Proteomics: Entering the High-Throughput Era for Hypothesis Testing
- (2016) Ludovic C. Gillet et al. Annual Review of Analytical Chemistry
- The dynamic N1-methyladenosine methylome in eukaryotic messenger RNA
- (2016) Dan Dominissini et al. NATURE
- OpenMS: a flexible open-source software platform for mass spectrometry data analysis
- (2016) Hannes L Röst et al. NATURE METHODS
- The complete chemical structure ofSaccharomyces cerevisiaerRNA: partial pseudouridylation of U2345 in 25S rRNA by snoRNA snR9
- (2016) Masato Taoka et al. NUCLEIC ACIDS RESEARCH
- 2016 update of the PRIDE database and its related tools
- (2016) Juan Antonio Vizcaíno et al. NUCLEIC ACIDS RESEARCH
- Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome
- (2015) Bastian Linder et al. NATURE METHODS
- PacBio Sequencing and Its Applications
- (2015) Anthony Rhoads et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Distribution and frequencies of post-transcriptional modifications in tRNAs
- (2015) Magdalena A Machnicka et al. RNA Biology
- Aberrant methylation of tRNAs links cellular stress to neuro-developmental disorders
- (2014) S. Blanco et al. EMBO JOURNAL
- The mzTab Data Exchange Format: Communicating Mass-spectrometry-based Proteomics and Metabolomics Experimental Results to a Wider Audience
- (2014) Johannes Griss et al. MOLECULAR & CELLULAR PROTEOMICS
- Quantitative analysis of ribonucleoside modifications in tRNA by HPLC-coupled mass spectrometry
- (2014) Dan Su et al. Nature Protocols
- Intact MicroRNA Analysis Using High Resolution Mass Spectrometry
- (2013) Majlinda Kullolli et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- Analysis of RNA base modification and structural rearrangement by single-molecule real-time detection of reverse transcription
- (2013) Igor D Vilfan et al. JOURNAL OF NANOBIOTECHNOLOGY
- TOPPAS: A Graphical Workflow Editor for the Analysis of High-Throughput Proteomics Data
- (2012) Johannes Junker et al. JOURNAL OF PROTEOME RESEARCH
- OMA and OPA—Software-Supported Mass Spectra Analysis of Native and Modified Nucleic Acids
- (2012) Adrien Nyakas et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- A cross-platform toolkit for mass spectrometry and proteomics
- (2012) Matthew C Chambers et al. NATURE BIOTECHNOLOGY
- Reversible RNA adenosine methylation in biological regulation
- (2012) Guifang Jia et al. TRENDS IN GENETICS
- mzML—a Community Standard for Mass Spectrometry Data
- (2010) Lennart Martens et al. MOLECULAR & CELLULAR PROTEOMICS
- TOPPView: An Open-Source Viewer for Mass Spectrometry Data
- (2009) Marc Sturm et al. JOURNAL OF PROTEOME RESEARCH
- Ariadne: a database search engine for identification and chemical analysis of RNA using tandem mass spectrometry data
- (2009) Hiroshi Nakayama et al. NUCLEIC ACIDS RESEARCH
- MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
- (2008) Jürgen Cox et al. NATURE BIOTECHNOLOGY
- tRNAdb 2009: compilation of tRNA sequences and tRNA genes
- (2008) F. Juhling et al. NUCLEIC ACIDS RESEARCH
- Assigning Significance to Peptides Identified by Tandem Mass Spectrometry Using Decoy Databases
- (2007) Lukas Käll et al. JOURNAL OF PROTEOME RESEARCH
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More